Struct fasten_convert::FastenSeq

pub(crate) struct FastenSeq {
    pub(crate) id1: String,
    pub(crate) seq1: String,
    pub(crate) qual1: String,
    pub(crate) id2: String,
    pub(crate) seq2: String,
    pub(crate) qual2: String,
}

Struct that can handle paired end reads

Fields

id1: String

seq1: String

qual1: String

id2: String

seq2: String

qual2: String

Implementations

impl FastenSeq

pub(crate) fn new() -> FastenSeq

a blank new object is a set of blank strings for each value

pub(crate) fn as_fastq(&self) -> String

Return a formatted string as a fastq entry

pub(crate) fn as_fasta(&self) -> String

Return a formatted string as a fasta entry

pub(crate) fn as_sam(&self) -> String

Return a formatted string as a sam entry

Trait Implementations

impl Clone for FastenSeq

fn clone(&self) -> FastenSeq

Returns a copy of the value.

fn clone_from(&mut self, source: &Self)

Performs copy-assignment from source.

impl Debug for FastenSeq

fn fmt(&self, f: &mut Formatter<'_>) -> Result

Formats the value using the given formatter.