Function	Description
analysePlate	Apply a statistic to the data from each well in a plate
as.all	Coercion without introduction of NAs
barploterrbar	Barplot with error bars.
combineFrames	Combine the cytoFrames within a cytoSet according to some grouping factor
csApply	Apply a function over the intensities in a cytoSet
cytoFrame-class	'cytoFrame': a class for storing observed quantitative properties from a population of cells, for example from a FACS run or from automated microscopy
cytoSet-class	'cytoSet': a class for storing raw data from a quantitative cell-based assay
ddCt	Apply the ddCt method for a given data set
eListWrite	Write the eList
fitNorm2	Fit bivariate normal distribution.
gate.cytoFrame	Functions to gate cytometry data
getPradaPar	Set and query global parameters for functions in the prada package
plot.cytoFrameGate	Visualize Observations within defined Gates
plotNorm2	Plot fitted bivariate normal distribution.
plotPlate	Plot a well statistic in false color representation.
readCytoSet	Create a cytoSet object from one or more FCS 3.0 files
readFCS	Read an FCS 3.0 file
readFCSdata	Auxiliary functions for readFCS
readSDM	Read an SDM file
removeCensored	Remove rows that contain censored data
threePanelPlot	Visualize cytometry data
thresholds	Discretize a two-dimensional data space into quadrants by applying thresholds