Function	Description
buildMACAT	Create MACAT list from objects in workspace
compute.sliding	Compute and plot smoothing of expression values or scores along the chromosome
discreteKernelize	Discretize and smooth expression values
discretize	Discretize expression values
discretizeAll	Discretize complete expression matrix
discretize.tscores	Discretize regularized t-scores
evalScoring	Score differential expression, assess significance, and smooth scores along the chromosome
evaluateParameters	Evaluate Performance of Kernel Parameters by Cross-validation
get.results	Access results of 'evalScoring'
kernelize	Smooth expression values or scores
kernelizeAll	Smooth expression data for all chromosomes
kernelizeToPython	Smooth expression values and write to file
plot.MACATevalScoring	Plot function for MACATevalScoring objects.
preprocessedLoader	Read in data and produce MACAT list
scoring	Compute (regularized) t-scores for gene expression data
stjd	Subset Microarry Data from St.Jude Children Research Hospital (USA)