Function	Description
alongChrom	A function for plotting expression data from an exprset for a given chromosome.
amplicon.plot	Create an amplicon plot
cColor	A function for marking specific probes on a cPlot.
cPlot	A plotting function for chromosomes.
cScale	A function for mapping chromosome length to a number of points.
eset133a	A dataset of class exprSet
GetColor	A function to get the Red-Blue color scheme used by dChip
histStack	Stacked histogram
identifyLines	A function for identifying sample lines on an alongChrom() plot.
imageMap-methods	Write an HTML IMG tag together with a MAP image map.
make.chromOrd	Make a chromOrd object
Makesense	Produce Smoothed Sense/Anti-sense For All Chromosomes
openHtmlPage	Open and close an HTML file for writing.
plotChr	Plot Smoothed Sense/Anti-sense of Specified Chromosomes
plotExpressionGraph	A function to plot a graph colored by expression data
savepng	Save the contents of the current graphics device to a file
smoothScatter	Scatterplots with smoothed densities color representation