| Function | Description |
| affinity.spline.coefs | Spline coefficients for estimation of affinity from probe sequence |
| bg.adjust.affinities | Background adjustment with sequence information (internal function) |
| bg.adjust.gcrma | GCRMA background adjust (internal function) |
| bg.parameters.ns | Estimation of non-specific Binding Background Parameters |
| compute.affinities | Probe Affinity computation |
| gcrma | Robust Multi-Array expression measure using sequence information |
| gcrma.engine | GCRMA background adjust engine(internal function) |
| gcrma.engine2 | GCRMA background adjust engine(internal function) |
| justGCRMA | Compute GCRMA Directly from CEL Files |