| Function | Description |
| bim.effects | Bayesian QTL map of loci and effects |
| bim.fdr | Bayesian False Discovery Rate for QTL mapping |
| bim.model | Bayesian model selection for number and pattern of QTL across genome |
| bim.qtl | Bayesian QTL estimation and mapping of loci |
| bmapqtl.options | Options Settings for BmapQTL |
| Bnapus | Cross structure for complete Brassica napus data |
| fisch | Eight QTL Stephens and Fisch simulated data |
| plot.bim | Diagnostics plots for Bayesian interval mapping |
| plot.bim.diag | Marginal and model-conditional summaries of Bayesian interval mapping diagnostics |
| plot.bim.loci | Jittered plot of Bayesian QTL loci samples by chromosome |
| plot.bim.mcmc | Bayesian MCMC sequence plots for burnin and iterations. |
| plot.bim.model | Graphical model assessment for Bayesian interval mapping |
| read.bim | Read samples from WinQTL output |
| read.bmapqtl | Read and write options for WinQTL |
| run.bmapqtl | Run Bmapqtl reversible jump MCMC |
| subset.bim | Subsetting Bayesian interval mapping data |
| summary.bim | Summary of Bayesian interval mapping samples |
| vern | Eight week vernalization data for Brassica napus |