Function	Description
arrayData-class	Class arrayData, a simple container for raw data and related information
cbind.arrayData	Cbind for objects of class arrayData
cbind.exprSetRG	Cbind for objects of class exprSetRG
colCors	Correlation coefficients between the corresponding columns (rows) of two matrices that have the same size.
controlledApply	controlledApply
controlledSubsetting	Subsetting of Arrays
detectReplicas	detectReplicas
exprSetRG-class	Class exprSetRG for two colour DNA microarray data (extension of exprSet)
fdc	FDC (false discovery count)
interweave	interweave
normalise	Normalisation of microarray data
plotDistributions	Visualisation of distributions
plot.imageMatrix	Visualisation of a matrix
processArrayData	Automated processing of two colour DNA microarray data
processArrayDataObject	Automated processing and normalisation of an arrayData-object (part of function processArrayData)
qualityDiagnostics	Generates quality diagnostic plots
qualityParameters	Calculation of quality characteristics for DNA microarray hybridisations
readIntensities	readIntensities
readpDataSlides	Reads the description of all slides or channels
removeSpots	Remove specified spots from objects
simpleApply	simpleApply
slideMerge	Averaging of two colour microarray replicas
spatialLayout	Calculation of two dimensional coordinates
spotMerge	Averaging of spot replicas
visualiseHybridisations	Microarray intensity data are visualised with respect to their spatial layout
visualiseQualityParameters	Graphical representation of quality parameters
write.htmltable	Write a data frame into an html table within a html page
writeToFile	Writes a textual representation of an exprSetRG and/or arrayData object