Function	Description
allOrfs	Get ORFs from a sequence
assemble	Create a sequence by gathering parts a sequence
AtoR	Conversion of addresses
compoSeq	Composition in mono, di or trinucleotides of a sequence
concat	Concatenate two sequences into a third one
dnaToRna	Transformation from T to U in a sequence, and the reverse
exactWord	Look for motifs in a sequence
fastaDescription	Read the description field from a fasta file
freeAllSeq	Free all sequences
freeSeq	Free one sequence
GeneR	Overview of GeneR package
getAccn	Return globals variables of a sequence
getParam	Give global variables associated to a sequence
globals	Globals variables on Gene sequences
indexFasta	Create an index for a fasta,embl,gbk file
insertSeq	Insert a sequence in another sequence
makeIndex	Make an index for a bank file
multiExtract	Extract regions from a sequence
paramFromIndex	Extract parameters from an index file
placeString	Put a character string into a sequence buffer.
posMaskedSeq	Get all masked regions
readGbkLocation	Get features from a GeneBank file
readSeq	Read a sequence from a Fasta, Embl or GeneBank file.
revComp	Performs the reverse of a sequence
seqSize	Size of all sequence buffers
seqUrl	Download a sequence in Fasta / Genbank / Embl format from Ncbi or Srs
setAccn	Set globals variables of a sequence
setParam	Set global variables associated to a sequence
sizeSeq	Size of a sequence in a bufseq
sizeSeqFasta	Size of a sequence from a fasta/embl/gbk file
str2ascii	Convert a string in its ascii code
translate	Translation from DNA trinucleotides to proteine
writeEmblLine	Write to Embl file
writeFasta	Write sequences into fasta file format