Function Description
ALL Acute Lymphoblastic Leukemia Data from the Ritz Laboratory
compCorrGraph A function to compute a correlation based graph from Gene Expression Data
compGdist A function to compute the distance between pairs of nodes in a graph.
dropECode Drop GO labels for specified Evidence Codes
getEvidence Get the Evidence codes for a set of GO terms.
getGOTerm Functions to Access GO data.
getOntology Get GO terms for a specified ontology
GOHyperG Hypergeometric Tests for GO
GOLeaves Identify the leaves in a GO Graph
GOstats-defunct Defunct Functions in GOstats Package
hasGOannote Check for GO annotation
idx2dimnames Index to Dimnames
makeGOGraph Construct a GO Graph
Ndists Distance matrices for the BCR/ABL and NEG subgroups.
notConn Find genes that are not connected to the others.
oneGOGraph Construct the GO graph given a set of leaves.
shortestPath Shortest Path Analysis
simLL Functions to compute similarities between GO graphs and also between LocusLink IDs based on their induced GO graphs.
triadCensus Triad Functions