| Function | Description |
| cal2 | Tryptic autoproteolysis masses |
| Calibextstat-class | Class "Calibextstat" |
| Calibintlist-class | Class "Calibintlist" |
| Calibintstat-class | Class "Calibintstat" : Internal calibration |
| Caliblist-class | Class "Caliblist" |
| Calibprelist-class | Class "Calibprelist" - peptide rule based calibration |
| Calibprestat-class | Class "Calibprestat": peptide rule based calibration |
| CalibPRstat-class | Class "CalibPRstat" - Testing |
| Calibstat-class | Class "Calibstat" -- Generic calibration object class |
| correctinternal-methods | Corrects the masses using internal calibration |
| CSKrig-class | Class "CSKrig" |
| CSsurf-class | Class "CSsurf" |
| CSsurf.gls-methods | Spatial calibration model for sample support |
| CSsurf.ls-methods | Obtains calibration model for mass spectrometric support. |
| CSTps-methods | Thin plate spline from Caliblist |
| diffFilter-methods | Remove mass differences |
| getdiff-methods | Computes all mass differences in and massvectorlist. |
| getextcalib-methods | Obtain external calibration model from poly-mer samples |
| getglobalcalib-methods | Obtain calibration coefficients by internal global calibration |
| getintcalib-methods | Obtain calibration coefficients using internal calibration |
| getLpepcalib-methods | Peptide role based calibration (preliminary) for aligned Massvectorlists |
| getmstCalib-methods | ~~ Methods for Function getmstCalib in Package 'mscalib' ~~ |
| getpepcalib-methods | Obtain calibration coefficients. (preliminary) |
| getPPGmasses | Compute poly-(propylene glycol) masses |
| getPRcalib-methods | ~~ Methods for Function getPRcalib in Package 'mscalib' ~~ |
| getprecalib-methods | Wool Smilansky peptide rule based calibration |
| globalcalib-methods | Calibrate Massvectorlist by internal global calibration |
| massFilter-methods | Methods for Function massFilter in Package 'mscalib' (preliminary) |
| mstCalib-class | Class "mstCalib" |
| pepFilter-methods | Methods for Function pepFilter in Package 'mscalib' (preliminary) |
| peproleFilter-methods | Methods for Function peproleFilter in Package 'mscalib' (prliminary) |
| residuals-methods | ~~ Methods for Function residuals in Package 'mscalib' ~~ |
| samples | Mass Spectra of protein and ppg samples |
| Surf-class | Class "Surf" |
| wsFilter-methods | Filtering of nonpeptide peaks |