Function	Description
AtoR	Conversion of addresses
GeneR	Overview of GeneR package
allOrfs	Get orfs from a sequence
assemble	Create a sequence by gathering parts a sequence
compoSeq	Composition in mono, di or trinucleotides of a sequence
concat	Concatenate two sequences into a third one
dnaToRna	Transformation from T to U in a sequence, and the reverse
exactWord	Look for motifs in a sequence
fastaDescription	Read the description field from a fasta file
freeAllSeq	Free all sequences
freeSeq	Free one sequence
getAccn	Return globals variables of a sequence
getParam	Give global variables associated to a sequence
globals	Globals variables on Gene sequences
indexFasta	Create an index for a fasta,embl,gbk file
insertSeq	Insert a sequence in another sequence
makeIndex	Make an index for a bank file
multiExtract	Extract regions from a sequence
paramFromIndex	Extract parameters from an index file
placeString	Put a character string into a sequence buffer.
readGbkLocation	Get features from a GeneBank file
readSeq	Read a sequence from a Fasta, Embl or GeneBank file.
revComp	Performs the reverse of a sequence
seqSize	Size of all sequence buffers
seqUrl	Download a sequence in Fasta / Genbank / Embl format from Ncbi or Srs
setAccn	Set globals variables of a sequence
setParam	Set global variables associated to a sequence
shuffle	Randomisation of a sequence in mono, di or trinucleotides
sizeSeq	Size of a sequence in a bufseq
sizeSeqFasta	Size of a sequence from a fasta/embl/gbk file
str2ascii	Convert a string in its ascii code
strLower	Return character with upper or lower case
translate	Translation from DNA trinucleotides to proteine
unionSeg	Union segments
writeEmblLine	Write to Embl file
writeFasta	Write sequences into fasta file format