Function	Description
analysePlate	Apply a statistic to the data from each well in a plate
as.all	Coercion without introduction of NAs
barploterrbar	Barplot with error bars.
combineFrames	Combine the cytoFrames within a cytoSet according to some grouping factor
csApply	Apply a function over the intensities in a cytoSet
cytoFrame-class	'cytoFrame': a class for storing observed quantitative properties from a population of cells, for example from a FACS run or from automated microscopy
cytoSet-class	'cytoSet': a class for storing raw data from a quantitative cell-based assay
ddCt	Apply the ddCt method for a given data set (with or without efficiencies
eListWrite	Write the eList
estimateCrosstalkWell	Estimate crosstalk between two color channels.
fitNorm2	Fit bivariate normal distribution.
getDye	Extract the Dye name (CFP or YFP) from the clone ID by pattern matching
getElement	Functions to extract atomic data types (numeric, character) and vectors from an XML tree
getPradaPar	Set and query global parameters for functions in the prada package
histStack	Stacked histogram
imageMap	Write an HTML IMG tag together with a MAP image map.
mapSub2Plate	Map subplate well ID and subplate ID to 96-well plate well ID
openHTMLpage	Open and close an HTML file for writing.
plotNorm2	Plot fitted bivariate normal distribution.
plotPlate	Plot a well statistic in false color representation.
readCytoSet	Create a cytoSet object from one or more FCS 3.0 files
readFCS	Read an FCS 3.0 file
readFCSdata	Auxiliary functions for readFCS
readSDM	Read an SDM file
readWellXML	Specialized functions for Dorit Arlt's (DKFZ) proliferation assay project
removeCensored	Remove rows that contain censored data
shorth	Midpoint of the shorth
smoothScatter	Scatterplots with smoothed densities color representation
statWellLocfit	Calculate a statistic for the data from one well
thresholds	Discretize a two-dimensional data space into quadrants by applying thresholds