| Function | Description |
| am.tran | AM transformation for LPE |
| base.error.Olig | Baseline error estimation for oligonucleotide arrays |
| boot.base.error.Olig | Baseline error bootstrap estimation for oligonucleotide arrays |
| fixbound.predict.smooth.spline | Prediction using smoothing spine |
| hem | Heterogeneous Error Model (HEM) for Microarray Data |
| hem.eb.prior | Empirical Bayes (EB) Prior Specification |
| hem.fdr | FDR Evaluation |
| hem.null.one | Generation of null data |
| hem.null.two | Generation of null data |
| hem.preproc | Preprocessing |
| immune | Gene Expression Data for a mouse immune response study |
| mubcp | Gene expression data for mouse B cell development |
| nonpar.error.Olig | Baseline error nonparametric estimation for oligonucleotide arrays |
| nonpar.rep.error.Olig | Baseline error nonparametric estimation for oligonucleotide arrays |
| par.error.Olig | Baseline error parametric estimation for oligonucleotide arrays |
| par.rep.error.Olig | Baseline error parametric estimation for oligonucleotide arrays |
| pbrain | Gene expression data for primate brains |
| permut | Permutation |
| plotsample | Plotting MCMC samples for diagnosis |
| quant.norm | Quantile normalization |
| quant.normalize | Quantile normalization |
| radiate | Gene expression data for ionizing radiation data |