bioconductor
3.5
bioc
manuals
..
ABAEnrichment/
ABSSeq/
ABarray/
ACME/
ADaCGH2/
AGDEX/
AIMS/
ALDEx2/
AMOUNTAIN/
ARRmNormalization/
ASAFE/
ASEB/
ASGSCA/
ASSET/
ASSIGN/
ASpli/
ATACseqQC/
AffyCompatible/
AffyExpress/
AffyRNADegradation/
AgiMicroRna/
AllelicImbalance/
AnalysisPageServer/
Anaquin/
AneuFinder/
AnnotationDbi/
AnnotationFilter/
AnnotationForge/
AnnotationFuncs/
AnnotationHub/
AnnotationHubData/
ArrayExpress/
ArrayExpressHTS/
ArrayTV/
ArrayTools/
AtlasRDF/
BAC/
BADER/
BAGS/
BBCAnalyzer/
BCRANK/
BEAT/
BEclear/
BGmix/
BHC/
BLMA/
BPRMeth/
BRAIN/
BSgenome/
BUMHMM/
BUS/
BaalChIP/
BadRegionFinder/
BaseSpaceR/
Basic4Cseq/
BasicSTARRseq/
BatchQC/
BayesKnockdown/
BayesPeak/
BeadDataPackR/
BgeeDB/
BiGGR/
BiRewire/
BiSeq/
BicARE/
BioCor/
BioMVCClass/
BioMedR/
BioNet/
BioQC/
BioSeqClass/
Biobase/
BiocCaseStudies/
BiocCheck/
BiocFileCache/
BiocGenerics/
BiocInstaller/
BiocParallel/
BiocStyle/
BiocWorkflowTools/
Biostrings/
BitSeq/
BrainStars/
BridgeDbR/
BrowserViz/
BrowserVizDemo/
BubbleTree/
BufferedMatrix/
BufferedMatrixMethods/
CAFE/
CAGEr/
CALIB/
CAMERA/
CATALYST/
CAnD/
CCPROMISE/
CFAssay/
CGEN/
CGHbase/
CGHcall/
CGHnormaliter/
CGHregions/
CHRONOS/
CINdex/
CMA/
CNAnorm/
CNEr/
CNORdt/
CNORfeeder/
CNORfuzzy/
CNORode/
CNPBayes/
CNTools/
CNVPanelizer/
CNVrd2/
CNVtools/
CODEX/
COHCAP/
COMPASS/
CONFESS/
CORREP/
COSNet/
CRISPRseek/
CRImage/
CSAR/
CSSP/
CVE/
CancerInSilico/
CancerMutationAnalysis/
CancerSubtypes/
Cardinal/
Category/
CausalR/
CellMapper/
CellNOptR/
CexoR/
ChAMP/
ChIPComp/
ChIPQC/
ChIPXpress/
ChIPexoQual/
ChIPpeakAnno/
ChIPseeker/
ChIPseqR/
ChIPsim/
ChemmineOB/
ChemmineR/
Chicago/
ChromHeatMap/
ClassifyR/
Clomial/
Clonality/
ClusterSignificance/
CoCiteStats/
CoGAPS/
CoRegNet/
CompGO/
ComplexHeatmap/
ConsensusClusterPlus/
CopywriteR/
CorMut/
Cormotif/
CountClust/
CoverageView/
CrispRVariants/
CytoML/
DAPAR/
DART/
DBChIP/
DChIPRep/
DECIPHER/
DEDS/
DEFormats/
DEGraph/
DEGreport/
DEGseq/
DESeq/
DESeq2/
DEXSeq/
DEsubs/
DFP/
DMRScan/
DMRcaller/
DMRcate/
DMRforPairs/
DNABarcodes/
DNAcopy/
DNAshapeR/
DOQTL/
DOSE/
DRIMSeq/
DSS/
DTA/
DaMiRseq/
DeMAND/
DeconRNASeq/
DeepBlueR/
DelayedArray/
DiffBind/
DiffLogo/
Director/
DirichletMultinomial/
DriverNet/
DrugVsDisease/
DupChecker/
DynDoc/
EBImage/
EBSEA/
EBSeq/
EBSeqHMM/
EBarrays/
EBcoexpress/
EDASeq/
EDDA/
EGAD/
EGSEA/
ELBOW/
ELMER/
EMDomics/
ENCODExplorer/
ENVISIONQuery/
ENmix/
EWCE/
EasyqpcR/
EmpiricalBrownsMethod/
EnrichedHeatmap/
EnrichmentBrowser/
EventPointer/
ExiMiR/
ExperimentHub/
ExperimentHubData/
ExpressionAtlas/
ExpressionView/
FEM/
FGNet/
FISHalyseR/
FRGEpistasis/
FamAgg/
FindMyFriends/
FitHiC/
FlowRepositoryR/
FlowSOM/
FourCSeq/
FunChIP/
FunciSNP/
GA4GHclient/
GAprediction/
GEM/
GENE.E/
GENESIS/
GEOmetadb/
GEOquery/
GEOsearch/
GEOsubmission/
GEWIST/
GGBase/
GGtools/
GISPA/
GLAD/
GMRP/
GOFunction/
GOSemSim/
GOSim/
GOTHiC/
GOexpress/
GOpro/
GOstats/
GOsummaries/
GRENITS/
GRmetrics/
GRridge/
GSALightning/
GSAR/
GSCA/
GSEABase/
GSEAlm/
GSRI/
GSReg/
GSVA/
GUIDEseq/
GWASTools/
GenRank/
GenVisR/
GeneAnswers/
GeneBreak/
GeneExpressionSignature/
GeneGA/
GeneGeneInteR/
GeneMeta/
GeneNetworkBuilder/
GeneOverlap/
GeneRegionScan/
GeneSelectMMD/
GeneSelector/
GeneticsDesign/
GeneticsPed/
GenoGAM/
GenomeGraphs/
GenomeInfoDb/
GenomicAlignments/
GenomicDataCommons/
GenomicFeatures/
GenomicFiles/
GenomicInteractions/
GenomicRanges/
GenomicScores/
GenomicTuples/
Genominator/
Glimma/
GlobalAncova/
GoogleGenomics/
GraphAT/
GraphAlignment/
GraphPAC/
GreyListChIP/
Guitar/
Gviz/
HCsnip/
HDF5Array/
HDTD/
HELP/
HEM/
HIBAG/
HMMcopy/
HTSFilter/
HTSanalyzeR/
HTSeqGenie/
HTqPCR/
Harman/
Harshlight/
Heatplus/
HelloRanges/
HiTC/
HilbertCurve/
HilbertVis/
HilbertVisGUI/
HybridMTest/
IHW/
IMAS/
IMPCdata/
INPower/
INSPEcT/
IONiseR/
IPO/
IPPD/
IRanges/
ISoLDE/
ITALICS/
IVAS/
IWTomics/
Icens/
IdMappingAnalysis/
IdMappingRetrieval/
IdeoViz/
Imetagene/
ImmuneSpaceR/
ImpulseDE/
ImpulseDE2/
InPAS/
IntEREst/
InteractionSet/
IsoGeneGUI/
JunctionSeq/
KCsmart/
KEGGREST/
KEGGgraph/
KEGGlincs/
KEGGprofile/
LBE/
LEA/
LINC/
LMGene/
LOBSTAHS/
LOLA/
LPE/
LPEadj/
LVSmiRNA/
LedPred/
Linnorm/
LiquidAssociation/
Logolas/
LowMACA/
LymphoSeq/
M3D/
M3Drop/
MADSEQ/
MAIT/
MANOR/
MAST/
MBASED/
MBAmethyl/
MBCB/
MBttest/
MCRestimate/
MCbiclust/
MEAL/
MEDIPS/
MEDME/
MEIGOR/
MGFM/
MGFR/
MIGSA/
MIMOSA/
MLInterfaces/
MLP/
MLSeq/
MMDiff2/
MODA/
MPFE/
MSGFgui/
MSGFplus/
MSnID/
MSnbase/
MSstats/
MVCClass/
MWASTools/
MantelCorr/
MassArray/
MassSpecWavelet/
MatrixRider/
MaxContrastProjection/
MeSHDbi/
MeSHSim/
MeasurementError.cor/
MergeMaid/
Mergeomics/
MetCirc/
Metab/
MetaboSignal/
MethPed/
MethTargetedNGS/
MethylAid/
MethylMix/
MethylSeekR/
Mfuzz/
MiChip/
MiPP/
MiRaGE/
MineICA/
MinimumDistance/
Mirsynergy/
MmPalateMiRNA/
MoPS/
MoonlightR/
MotIV/
MotifDb/
Mulcom/
MultiAssayExperiment/
MultiDataSet/
MultiMed/
MutationalPatterns/
NADfinder/
NCIgraph/
NGScopy/
NOISeq/
NTW/
NanoStringDiff/
NanoStringQCPro/
NarrowPeaks/
NetPathMiner/
NetSAM/
NormqPCR/
NuPoP/
OCplus/
OGSA/
OLIN/
OLINgui/
OSAT/
OTUbase/
OmicCircos/
OmicsMarkeR/
OncoScore/
OncoSimulR/
OperaMate/
OrderedList/
Organism.dplyr/
OrganismDbi/
Oscope/
OutlierD/
PAA/
PADOG/
PANR/
PAPi/
PAnnBuilder/
PCAN/
PCpheno/
PECA/
PGA/
PGSEA/
PICS/
PING/
PLPE/
POST/
PPInfer/
PREDA/
PROMISE/
PROPER/
PROcess/
PSEA/
PSICQUIC/
PWMEnrich/
PanVizGenerator/
Path2PPI/
PathNet/
PathoStat/
Pbase/
PharmacoGx/
PhenStat/
Pi/
Pigengene/
Polyfit/
Prize/
ProCoNA/
Prostar/
ProtGenerics/
ProteomicsAnnotationHubData/
PureCN/
Pviz/
QDNAseq/
QUALIFIER/
QUBIC/
QuartPAC/
QuasR/
QuaternaryProd/
R3CPET/
R453Plus1Toolbox/
R4RNA/
RBGL/
RBM/
RBioinf/
RCAS/
RCASPAR/
RCy3/
RCyjs/
RCytoscape/
RDAVIDWebService/
RDRToolbox/
REDseq/
REMP/
RGSEA/
RGalaxy/
RGraph2js/
RIPSeeker/
RITAN/
RIVER/
RImmPort/
RJMCMCNucleosomes/
RLMM/
RMassBank/
RNASeqPower/
RNAinteract/
RNAither/
RNAprobR/
ROC/
ROTS/
ROntoTools/
RPA/
RRHO/
RSVSim/
RTCA/
RTCGA/
RTCGAToolbox/
RTN/
RTNduals/
RTopper/
RUVSeq/
RUVcorr/
RUVnormalize/
RaggedExperiment/
RamiGO/
RankProd/
RareVariantVis/
Rariant/
RbcBook1/
Rbowtie/
Rcade/
Rchemcpp/
RchyOptimyx/
Rcpi/
Rdisop/
ReQON/
ReactomePA/
ReadqPCR/
RedeR/
RefNet/
RefPlus/
Repitools/
ReportingTools/
Rgraphviz/
Rhtslib/
RiboProfiling/
Ringo/
Risa/
Rmagpie/
RmiR/
RnBeads/
RnaSeqGeneEdgeRQL/
RnaSeqSampleSize/
Rnits/
Roleswitch/
RpsiXML/
Rqc/
Rsamtools/
Rsubread/
Rtreemix/
S4Vectors/
SAGx/
SANTA/
SBMLR/
SC3/
SCAN.UPC/
SELEX/
SEPA/
SGSeq/
SICtools/
SIM/
SIMAT/
SIMLR/
SISPA/
SLGI/
SLqPCR/
SMAP/
SMITE/
SNAGEE/
SNPRelate/
SNPchip/
SNPediaR/
SNPhood/
SPEM/
SPIA/
SPLINTER/
SQUADD/
SRAdb/
SRGnet/
SSPA/
STAN/
STATegRa/
STRINGdb/
STROMA4/
SVAPLSseq/
SVM2CRM/
SWATH2stats/
SamSPECTRAL/
ScISI/
SemDist/
SeqArray/
SeqGSEA/
SeqVarTools/
ShortRead/
SigCheck/
SigFuge/
SimBindProfiles/
SomaticSignatures/
SpacePAC/
SpeCond/
SpidermiR/
SplicingGraphs/
StarBioTrek/
Starr/
Streamer/
SummarizedExperiment/
Sushi/
SwathXtend/
SwimR/
TCC/
TCGAbiolinks/
TCGAbiolinksGUI/
TCseq/
TDARACNE/
TEQC/
TFBSTools/
TIN/
TPP/
TRONCO/
TSCAN/
TSRchitect/
TSSi/
TVTB/
TarSeqQC/
TargetScore/
TargetSearch/
TitanCNA/
ToPASeq/
TransView/
TurboNorm/
TypeInfo/
UNDO/
UniProt.ws/
Uniquorn/
VanillaICE/
VariantAnnotation/
VariantFiltering/
VariantTools/
Vega/
VegaMC/
XBSeq/
XDE/
XVector/
YAPSA/
a4/
a4Base/
a4Classif/
a4Core/
a4Preproc/
a4Reporting/
aCGH/
acde/
adSplit/
affxparser/
affy/
affyContam/
affyILM/
affyPLM/
affyPara/
affyQCReport/
affycomp/
affycoretools/
affyio/
affylmGUI/
affypdnn/
agilp/
alpine/
alsace/
altcdfenvs/
ampliQueso/
anamiR/
annaffy/
annmap/
annotate/
annotationTools/
annotatr/
anota/
antiProfiles/
apComplex/
aroma.light/
arrayMvout/
arrayQuality/
arrayQualityMetrics/
attract/
bacon/
ballgown/
bamsignals/
banocc/
basecallQC/
baySeq/
beadarray/
beadarraySNP/
bgafun/
bgx/
bigmelon/
bigmemoryExtras/
bioCancer/
bioDist/
bioassayR/
biobroom/
biocGraph/
biocViews/
biomaRt/
biomformat/
biomvRCNS/
biosigner/
biosvd/
biotmle/
biovizBase/
birta/
birte/
blima/
branchpointer/
bridge/
bsseq/
bumphunter/
caOmicsV/
canceR/
cancerclass/
casper/
categoryCompare/
ccmap/
ccrepe/
cellGrowth/
cellHTS2/
cellTree/
cellbaseR/
cellity/
cellscape/
cghMCR/
charm/
chimera/
chimeraviz/
chipenrich/
chipseq/
chopsticks/
chroGPS/
chromDraw/
chromPlot/
chromstaR/
cisPath/
cleanUpdTSeq/
cleaver/
clippda/
clipper/
clonotypeR/
clst/
clstutils/
clustComp/
clusterExperiment/
clusterProfiler/
clusterSeq/
clusterStab/
cn.farms/
cn.mops/
cnvGSA/
coGPS/
coMET/
coRNAi/
cobindR/
codelink/
cogena/
compEpiTools/
compcodeR/
consensusSeekeR/
contiBAIT/
conumee/
convert/
copa/
copynumber/
coseq/
cosmiq/
covEB/
covRNA/
cpvSNP/
cqn/
crisprseekplus/
crlmm/
crossmeta/
csaw/
ctc/
ctsGE/
cummeRbund/
customProDB/
cycle/
cydar/
cytofkit/
dSimer/
daMA/
dada2/
dagLogo/
dcGSA/
ddCt/
ddgraph/
debrowser/
deepSNV/
deltaGseg/
derfinder/
derfinderHelper/
derfinderPlot/
destiny/
dexus/
diffGeneAnalysis/
diffHic/
diffloop/
diggit/
discordant/
dks/
domainsignatures/
doppelgangR/
dualKS/
dupRadar/
dyebias/
easyRNASeq/
ecolitk/
edge/
edgeR/
eegc/
eiR/
eisa/
ensemblVEP/
ensembldb/
epiNEM/
epigenomix/
epivizr/
epivizrData/
epivizrServer/
epivizrStandalone/
erccdashboard/
erma/
esetVis/
eudysbiome/
exomeCopy/
exomePeak/
explorase/
fCCAC/
fCI/
fabia/
facopy/
factDesign/
farms/
fastLiquidAssociation/
fastseg/
fdrame/
ffpe/
fgsea/
flagme/
flipflop/
flowAI/
flowBeads/
flowBin/
flowCHIC/
flowCL/
flowClean/
flowClust/
flowCore/
flowCyBar/
flowDensity/
flowFP/
flowFit/
flowMap/
flowMatch/
flowMeans/
flowMerge/
flowPeaks/
flowPloidy/
flowPlots/
flowQ/
flowQB/
flowStats/
flowTime/
flowTrans/
flowType/
flowUtils/
flowVS/
flowViz/
flowWorkspace/
flowcatchR/
fmcsR/
focalCall/
frma/
frmaTools/
funtooNorm/
gCMAP/
gCMAPWeb/
gCrisprTools/
gQTLBase/
gQTLstats/
gaga/
gage/
gaggle/
gaia/
garfield/
gaucho/
gcapc/
gcatest/
gcrma/
gdsfmt/
geNetClassifier/
geecc/
genArise/
genbankr/
geneAttribution/
geneClassifiers/
geneRecommender/
geneRxCluster/
geneXtendeR/
genefilter/
genefu/
geneplast/
geneplotter/
genoCN/
genomation/
genomeIntervals/
genomes/
genoset/
genotypeeval/
genphen/
gespeR/
ggbio/
ggcyto/
ggtree/
girafe/
globalSeq/
globaltest/
gmapR/
goProfiles/
goSTAG/
goTools/
goseq/
gpls/
gprege/
graph/
graphite/
groHMM/
gtrellis/
gwascat/
h5vc/
hapFabia/
heatmaps/
hiAnnotator/
hiReadsProcessor/
hicrep/
hierGWAS/
hopach/
hpar/
htSeqTools/
hyperdraw/
hypergraph/
iASeq/
iBBiG/
iBMQ/
iCARE/
iCOBRA/
iCheck/
iChip/
iClusterPlus/
iGC/
iPAC/
iSeq/
ibh/
ideal/
idiogram/
illuminaio/
imageHTS/
immunoClust/
impute/
intansv/
interactiveDisplay/
interactiveDisplayBase/
inveRsion/
iontree/
isobar/
isomiRs/
iterativeBMA/
iterativeBMAsurv/
joda/
karyoploteR/
kebabs/
keggorthology/
kimod/
lapmix/
ldblock/
les/
lfa/
limma/
limmaGUI/
lmdme/
logicFS/
logitT/
lol/
lpNet/
lpsymphony/
lumi/
mAPKL/
mBPCR/
mQTL.NMR/
maCorrPlot/
maPredictDSC/
maSigPro/
maanova/
macat/
made4/
maftools/
maigesPack/
makecdfenv/
manta/
mapscape/
marray/
maskBAD/
massiR/
matchBox/
matter/
mcaGUI/
mdgsa/
mdqc/
meshes/
meshr/
messina/
metaArray/
metaCCA/
metaMS/
metaSeq/
metabomxtr/
metagene/
metagenomeFeatures/
metagenomeSeq/
metahdep/
metaseqR/
metavizr/
methVisual/
methyAnalysis/
methylInheritance/
methylKit/
methylMnM/
methylPipe/
methylumi/
mgsa/
miRLAB/
miRNAmeConverter/
miRNApath/
miRNAtap/
miRcomp/
microRNA/
mimager/
minet/
minfi/
mirIntegrator/
missMethyl/
mitoODE/
mmnet/
mogsa/
monocle/
mosaics/
motifRG/
motifStack/
motifbreakR/
motifcounter/
msPurity/
msa/
msgbsR/
msmsEDA/
msmsTests/
multiClust/
multiOmicsViz/
multiscan/
multtest/
muscle/
mvGST/
mygene/
myvariant/
mzID/
mzR/
ncdfFlow/
nem/
netReg/
netbenchmark/
netbiov/
nethet/
netprioR/
netresponse/
networkBMA/
nnNorm/
nondetects/
normalize450K/
normr/
npGSEA/
nucleR/
nucleoSim/
nudge/
occugene/
odseq/
oligo/
oligoClasses/
omicade4/
oneChannelGUI/
ontoCAT/
openCyto/
oposSOM/
oppar/
pRoloc/
pRolocGUI/
paircompviz/
pandaR/
panp/
parglms/
parody/
pathRender/
pathVar/
pathifier/
pathprint/
pathview/
paxtoolsr/
pbcmc/
pcaExplorer/
pcaGoPromoter/
pcaMethods/
pcot2/
pdInfoBuilder/
pdmclass/
pepStat/
pepXMLTab/
pgca/
phenoDist/
phenoTest/
philr/
phosphonormalizer/
phyloseq/
piano/
pickgene/
pint/
pkgDepTools/
plateCore/
plethy/
plgem/
plier/
plrs/
plw/
pmm/
podkat/
polyester/
ppiStats/
pqsfinder/
prada/
prebs/
predictionet/
preprocessCore/
proBAMr/
proFIA/
procoil/
profileScoreDist/
prot2D/
proteinProfiles/
proteoQC/
psichomics/
psygenet2r/
puma/
pvac/
pvca/
pwOmics/
qcmetrics/
qpcrNorm/
qpgraph/
qrqc/
qsea/
quantro/
quantsmooth/
qusage/
qvalue/
r3Cseq/
rBiopaxParser/
rCGH/
rDGIdb/
rGADEM/
rGREAT/
rHVDM/
rMAT/
rRDP/
rSFFreader/
rTANDEM/
rTRM/
rTRMui/
rain/
rama/
ramwas/
randPack/
rbsurv/
rcellminer/
readat/
reb/
recount/
recoup/
regionReport/
regioneR/
regsplice/
rfPred/
rgsepd/
rhdf5/
riboSeqR/
rnaSeqMap/
rnaseqcomp/
roar/
rols/
ropls/
rpx/
rqt/
rqubic/
rsbml/
rtracklayer/
sRAP/
sSeq/
safe/
sagenhaft/
samExploreR/
sampleClassifier/
sangerseqR/
sapFinder/
savR/
scDD/
scater/
scde/
scone/
scran/
scsR/
segmentSeq/
semisup/
seq2pathway/
seqCNA/
seqLogo/
seqPattern/
seqTools/
seqbias/
seqplots/
sevenbridges/
shinyMethyl/
shinyTANDEM/
sigPathway/
sigaR/
siggenes/
sights/
signeR/
sigsquared/
similaRpeak/
simpleaffy/
simulatorZ/
sincell/
sizepower/
skewr/
snapCGH/
snm/
snpStats/
soGGi/
sparseDOSSA/
specL/
spikeLI/
spkTools/
splatter/
spliceR/
spliceSites/
splicegear/
splineTimeR/
splots/
spotSegmentation/
sscore/
sscu/
ssize/
ssviz/
staRank/
statTarget/
stepNorm/
stepwiseCM/
subSeq/
supraHex/
survcomp/
sva/
swfdr/
switchBox/
switchde/
synapter/
synergyfinder/
synlet/
systemPipeR/
tRanslatome/
ternarynet/
tigre/
tilingArray/
timecourse/
timescape/
tkWidgets/
tofsims/
topGO/
trackViewer/
tracktables/
transcriptR/
traseR/
treeio/
triform/
trigger/
trio/
triplex/
tspair/
tweeDEseq/
twilight/
twoddpcr/
tximport/
uSORT/
unifiedWMWqPCR/
variancePartition/
vbmp/
viper/
vsn/
vtpnet/
wateRmelon/
wavClusteR/
waveTiling/
weaver/
webbioc/
widgetTools/
wiggleplotr/
xcms/
xmapbridge/
xps/
yamss/
yaqcaffy/
yarn/
zlibbioc/
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生成于 Thu, 08 Jun 2023 15:45:16 +0000