bioconductor
3.18
bioc
vignettes
..
ABSSeq/
ABarray/
ACE/
ACME/
ADAM/
ADAMgui/
ADImpute/
AGDEX/
AHMassBank/
AIMS/
ALDEx2/
AMARETTO/
AMOUNTAIN/
ANCOMBC/
APAlyzer/
APL/
ARRmNormalization/
ASAFE/
ASEB/
ASGSCA/
ASICS/
ASSET/
ASSIGN/
ASURAT/
ATACseqQC/
ATACseqTFEA/
AUCell/
AWFisher/
AffiXcan/
AllelicImbalance/
AlphaBeta/
AnVIL/
AnVILBilling/
AnVILPublish/
AnVILWorkflow/
Anaquin/
AneuFinder/
AnnotationDbi/
AnnotationFilter/
AnnotationForge/
AnnotationHub/
AnnotationHubData/
ArrayExpress/
AssessORF/
BADER/
BAGS/
BANDITS/
BASiCS/
BASiCStan/
BBCAnalyzer/
BCRANK/
BEARscc/
BEAT/
BEclear/
BG2/
BHC/
BLMA/
BOBaFIT/
BPRMeth/
BRAIN/
BRGenomics/
BSgenome/
BSgenomeForge/
BUMHMM/
BUS/
BUScorrect/
BUSpaRse/
BUSseq/
BaalChIP/
BadRegionFinder/
BaseSpaceR/
Basic4Cseq/
BasicSTARRseq/
BatchQC/
BayesKnockdown/
BayesSpace/
BeadDataPackR/
BgeeCall/
BgeeDB/
BiFET/
BiGGR/
BiRewire/
BiSeq/
BicARE/
BindingSiteFinder/
BioCor/
BioMVCClass/
BioNAR/
BioNet/
BioNetStat/
BioQC/
Biobase/
BiocBaseUtils/
BiocCheck/
BiocFHIR/
BiocFileCache/
BiocHail/
BiocHubsShiny/
BiocIO/
BiocNeighbors/
BiocOncoTK/
BiocParallel/
BiocPkgTools/
BiocSet/
BiocSingular/
BiocSklearn/
BiocStyle/
BiocWorkflowTools/
Biostrings/
BloodGen3Module/
BridgeDbR/
BrowserViz/
BubbleTree/
BufferedMatrix/
BumpyMatrix/
CAEN/
CAGEfightR/
CAGEr/
CARNIVAL/
CATALYST/
CBEA/
CBNplot/
CCPROMISE/
CEMiTool/
CFAssay/
CGEN/
CGHcall/
CGHnormaliter/
CGHregions/
CHETAH/
CHRONOS/
CIMICE/
CINdex/
CMA/
CNAnorm/
CNEr/
CNORdt/
CNORfeeder/
CNORfuzzy/
CNORode/
CNTools/
CNVMetrics/
CNVPanelizer/
CNVRanger/
CNVfilteR/
CNViz/
CNVrd2/
COCOA/
CODEX/
COHCAP/
COMPASS/
CONFESS/
CONSTANd/
CORREP/
COSNet/
COTAN/
CRISPRseek/
CRImage/
CSAR/
CSSQ/
CTSV/
Cardinal/
Category/
CausalR/
CeTF/
CellBarcode/
CellBench/
CellMapper/
CellMixS/
CellNOptR/
CellScore/
CellTrails/
CellaRepertorium/
CelliD/
Cepo/
CexoR/
ChIPComp/
ChIPQC/
ChIPanalyser/
ChIPexoQual/
ChIPpeakAnno/
ChIPseeker/
ChIPseqR/
ChIPsim/
ChemmineOB/
ChemmineR/
Chicago/
ChromHeatMap/
ChromSCape/
CircSeqAlignTk/
CiteFuse/
ClassifyR/
Clomial/
ClusterJudge/
ClusterSignificance/
CoSIA/
Cogito/
ComPrAn/
ComplexHeatmap/
CompoundDb/
ConsensusClusterPlus/
CopyNumberPlots/
CoreGx/
CoverageView/
CrispRVariants/
CytoDx/
CytoGLMM/
CytoML/
CytoPipeline/
DAMEfinder/
DART/
DCATS/
DECIPHER/
DEFormats/
DEGraph/
DEGreport/
DEGseq/
DELocal/
DEScan2/
DESeq2/
DESpace/
DEqMS/
DEsingle/
DEsubs/
DExMA/
DFP/
DIAlignR/
DMCHMM/
DMRScan/
DMRcaller/
DNABarcodeCompatibility/
DNABarcodes/
DNAcopy/
DNAfusion/
DNAshapeR/
DOSE/
DRIMSeq/
DTA/
DaMiRseq/
DeMAND/
DeconRNASeq/
DeepBlueR/
DeepPINCS/
DegNorm/
DelayedArray/
DelayedDataFrame/
DelayedMatrixStats/
DelayedRandomArray/
DelayedTensor/
DepInfeR/
DiffBind/
DiffLogo/
DifferentialRegulation/
Dino/
Director/
DirichletMultinomial/
DiscoRhythm/
DominoEffect/
DriverNet/
DropletUtils/
Dune/
EBImage/
EBSEA/
EBSeq/
EBSeqHMM/
EBarrays/
EBcoexpress/
EDASeq/
EDIRquery/
ELMER/
EMDomics/
ENmix/
EWCE/
EmpiricalBrownsMethod/
EnMCB/
EnhancedVolcano/
EnrichedHeatmap/
EnrichmentBrowser/
EpiDISH/
EpiTxDb/
EventPointer/
ExCluster/
ExperimentHub/
ExperimentHubData/
ExperimentSubset/
ExploreModelMatrix/
ExpressionAtlas/
FEAST/
FELLA/
FGNet/
FISHalyseR/
FLAMES/
FRASER/
FRGEpistasis/
FamAgg/
FastqCleaner/
FeatSeekR/
FilterFFPE/
FindIT2/
FitHiC/
FlowSOM/
FunChIP/
FuseSOM/
GA4GHclient/
GA4GHshiny/
GARS/
GAprediction/
GBScleanR/
GDSArray/
GEM/
GENESIS/
GEOexplorer/
GEOfastq/
GEOquery/
GEWIST/
GGPA/
GIGSEA/
GISPA/
GLAD/
GMRP/
GNET2/
GOSemSim/
GOSim/
GOTHiC/
GOexpress/
GOfuncR/
GOpro/
GOstats/
GOsummaries/
GPA/
GRENITS/
GRaNIE/
GRmetrics/
GSALightning/
GSAR/
GSCA/
GSEABase/
GSEABenchmarkeR/
GSEAlm/
GSRI/
GSReg/
GSVA/
GSgalgoR/
GUIDEseq/
GWAS.BAYES/
GWASTools/
GWENA/
GateFinder/
GenProSeq/
GeneBreak/
GeneExpressionSignature/
GeneGeneInteR/
GeneMeta/
GeneNetworkBuilder/
GeneOverlap/
GeneRegionScan/
GeneSelectMMD/
GeneStructureTools/
GeneTonic/
GeneticsPed/
GenomAutomorphism/
GenomeInfoDb/
GenomicAlignments/
GenomicDataCommons/
GenomicDistributions/
GenomicFeatures/
GenomicFiles/
GenomicInteractionNodes/
GenomicInteractions/
GenomicOZone/
GenomicRanges/
GenomicScores/
GenomicSuperSignature/
GenomicTuples/
GeoDiff/
GeoTcgaData/
GeomxTools/
GladiaTOX/
Glimma/
GlobalAncova/
GmicR/
GraphAlignment/
GraphPAC/
GreyListChIP/
Guitar/
Gviz/
HDTD/
HELP/
HEM/
HGC/
HIBAG/
HIPPO/
HIREewas/
HMMcopy/
HPAanalyze/
HPiP/
HTSFilter/
Harman/
Heatplus/
Herper/
HiCBricks/
HiCDCPlus/
HiCDOC/
HiCExperiment/
HiCcompare/
HiContacts/
HiCool/
HiLDA/
HiTC/
HilbertCurve/
HilbertVis/
HilbertVisGUI/
HubPub/
HumanTranscriptomeCompendium/
HybridMTest/
IFAA/
IHW/
IMAS/
IMMAN/
IMPCdata/
INDEED/
INPower/
INSPEcT/
INTACT/
IONiseR/
IRanges/
ISAnalytics/
ISLET/
ITALICS/
IVAS/
IWTomics/
IdeoViz/
IgGeneUsage/
ImmuneSpaceR/
InPAS/
InTAD/
IntOMICS/
InterCellar/
InterMineR/
InteractionSet/
InteractiveComplexHeatmap/
IntramiRExploreR/
IsoCorrectoR/
IsoCorrectoRGUI/
KBoost/
KCsmart/
KEGGREST/
KEGGgraph/
KEGGlincs/
KinSwingR/
KnowSeq/
LACE/
LBE/
LEA/
LOLA/
LPE/
LPEadj/
LRBaseDbi/
LRcell/
LedPred/
LinTInd/
LineagePulse/
LinkHD/
LiquidAssociation/
LoomExperiment/
LymphoSeq/
M3C/
M3Drop/
MACSQuantifyR/
MACSr/
MADSEQ/
MAGAR/
MAGeCKFlute/
MAI/
MANOR/
MAST/
MBASED/
MBAmethyl/
MBCB/
MBECS/
MBQN/
MBttest/
MCbiclust/
MDTS/
MEAL/
MEB/
MEDIPS/
MEDME/
MGFM/
MGFR/
MIRA/
MLInterfaces/
MLP/
MLSeq/
MMDiff2/
MODA/
MOFA2/
MOGAMUN/
MOMA/
MOSim/
MPFE/
MPRAnalyze/
MQmetrics/
MSA2dist/
MSPrep/
MSstats/
MSstatsConvert/
MSstatsLOBD/
MSstatsLiP/
MSstatsPTM/
MSstatsShiny/
MSstatsTMT/
MVCClass/
MWASTools/
MantelCorr/
MassArray/
MassSpecWavelet/
MatrixRider/
MeSHDbi/
MeasurementError.cor/
Melissa/
Mergeomics/
MesKit/
MetCirc/
MetID/
MetaCyto/
MetaNeighbor/
MetaPhOR/
MetaboAnnotation/
MetaboCoreUtils/
MetaboSignal/
MethPed/
MethReg/
MethTargetedNGS/
MethylAid/
MethylMix/
MethylSeekR/
Mfuzz/
MiChip/
MiPP/
MiRaGE/
MicrobiomeProfiler/
MicrobiotaProcess/
MinimumDistance/
ModCon/
Modstrings/
MoleculeExperiment/
Motif2Site/
MotifDb/
MouseFM/
MsBackendMassbank/
MsBackendMgf/
MsBackendMsp/
MsBackendRawFileReader/
MsBackendSql/
MsCoreUtils/
MsDataHub/
MsExperiment/
MsFeatures/
MsQuality/
MuData/
MultiAssayExperiment/
MultiBaC/
MultiDataSet/
MultiMed/
MultimodalExperiment/
MungeSumstats/
MutationalPatterns/
NADfinder/
NBAMSeq/
NCIgraph/
NOISeq/
NPARC/
NTW/
NanoMethViz/
NanoStringDiff/
NanoStringNCTools/
NanoTube/
Nebulosa/
NetActivity/
NetPathMiner/
NetSAM/
NoRCE/
NormqPCR/
NuPoP/
OCplus/
OGRE/
OLIN/
OLINgui/
OPWeight/
ORFhunteR/
ORFik/
OSAT/
OTUbase/
OUTRIDER/
OVESEG/
OmaDB/
OmicCircos/
Omixer/
OmnipathR/
OncoScore/
OncoSimulR/
OpenStats/
OrderedList/
Organism.dplyr/
OrganismDbi/
Oscope/
PAA/
PADOG/
PAIRADISE/
PANR/
PAST/
PCAN/
PCAtools/
PDATK/
PICS/
PLPE/
POWSC/
PPInfer/
PREDA/
PROMISE/
PROPER/
PROPS/
PROcess/
PSEA/
PSMatch/
PWMEnrich/
PanViz/
PanomiR/
Path2PPI/
PathNet/
PathoStat/
PeacoQC/
PepsNMR/
PhIPData/
PharmacoGx/
PhenStat/
PhenoGeneRanker/
PhosR/
PhyloProfile/
Pi/
Pigengene/
PloGO2/
PoDCall/
ProteoDisco/
ProteoMM/
PureCN/
Pviz/
QDNAseq/
QFeatures/
QSutils/
QUBIC/
Qtlizer/
QuartPAC/
QuasR/
QuaternaryProd/
R3CPET/
R453Plus1Toolbox/
R4RNA/
RAREsim/
RBGL/
RBM/
RBioFormats/
RBioinf/
RCASPAR/
RCM/
RCX/
RCy3/
RCyjs/
RDRToolbox/
REBET/
REDseq/
REMP/
RESOLVE/
RGMQL/
RGSEA/
RGraph2js/
RITAN/
RIVER/
RImmPort/
RJMCMCNucleosomes/
RLMM/
RLSeq/
RLassoCox/
RNAAgeCalc/
RNASeqPower/
RNAmodR/
RNAmodR.AlkAnilineSeq/
RNAmodR.ML/
RNAmodR.RiboMethSeq/
RNAsense/
ROC/
ROCpAI/
ROSeq/
ROTS/
ROntoTools/
RProtoBufLib/
RRHO/
RSVSim/
RSeqAn/
RTCA/
RTCGA/
RTCGAToolbox/
RTN/
RTNduals/
RTNsurvival/
RTopper/
RUVSeq/
RUVcorr/
RUVnormalize/
RVS/
RadioGx/
RaggedExperiment/
RandomWalkRestartMH/
RankProd/
RareVariantVis/
Rarr/
RbcBook1/
Rbec/
Rbowtie/
Rbowtie2/
Rbwa/
Rcollectl/
Rcpi/
Rdisop/
ReQON/
ReactomeContentService4R/
ReactomeGraph4R/
ReactomePA/
ReadqPCR/
RedeR/
RedisParam/
RepViz/
ResidualMatrix/
Rfastp/
RgnTX/
Rgraphviz/
Rhdf5lib/
Rhisat2/
Rhtslib/
RiboCrypt/
RiboDiPA/
RiboProfiling/
Rmagpie/
Rmmquant/
RnBeads/
RnaSeqSampleSize/
RolDE/
Rqc/
Rsamtools/
Rsubread/
Rtpca/
Rtreemix/
S4Arrays/
S4Vectors/
SAIGEgds/
SANTA/
SBGNview/
SBMLR/
SC3/
SCANVIS/
SCArray/
SCArray.sat/
SCBN/
SCFA/
SCOPE/
SCnorm/
SDAMS/
SELEX/
SEtools/
SGCP/
SGSeq/
SIAMCAT/
SICtools/
SIM/
SIMAT/
SIMD/
SIMLR/
SLqPCR/
SMAD/
SMAP/
SMITE/
SNAGEE/
SNPRelate/
SNPediaR/
SNPhood/
SPEM/
SPIA/
SPIAT/
SPLINTER/
SPOTlight/
SPsimSeq/
SQLDataFrame/
SQUADD/
SRAdb/
STRINGdb/
STdeconvolve/
SUITOR/
SVMDO/
SWATH2stats/
SamSPECTRAL/
Scale4C/
ScaledMatrix/
Sconify/
ScreenR/
SemDist/
SeqArray/
SeqGSEA/
SeqGate/
SeqSQC/
SeqVarTools/
ShortRead/
SiPSiC/
SigCheck/
SigFuge/
SigsPack/
SimBu/
SimFFPE/
SingleCellExperiment/
SingleCellSignalR/
SingleMoleculeFootprinting/
SingleR/
SomaticSignatures/
SpacePAC/
Spaniel/
SparseArray/
SparseSignatures/
SpatialCPie/
SpatialDecon/
SpatialExperiment/
SpatialFeatureExperiment/
SpatialOmicsOverlay/
SpeCond/
Spectra/
SpectralTAD/
SpliceWiz/
SplicingFactory/
SplicingGraphs/
SpotClean/
StarBioTrek/
Statial/
Streamer/
Structstrings/
StructuralVariantAnnotation/
SubCellBarCode/
SummarizedBenchmark/
SummarizedExperiment/
Summix/
SwathXtend/
SynExtend/
SynMut/
TADCompare/
TAPseq/
TBSignatureProfiler/
TCGAbiolinks/
TCGAutils/
TDbasedUFE/
TDbasedUFEadv/
TEKRABber/
TENxIO/
TEQC/
TFARM/
TFBSTools/
TFEA.ChIP/
TFHAZ/
TFutils/
TIN/
TMixClust/
TNBC.CMS/
TOAST/
TOP/
TPP/
TPP2D/
TREG/
TRESS/
TRONCO/
TSCAN/
TTMap/
TargetDecoy/
TargetScore/
TargetSearch/
TileDBArray/
TimiRGeN/
TissueEnrich/
TitanCNA/
TnT/
ToxicoGx/
TrajectoryGeometry/
TrajectoryUtils/
TransView/
TreeAndLeaf/
TreeSummarizedExperiment/
Trendy/
TypeInfo/
UCell/
UMI4Cats/
UNDO/
Ularcirc/
UniProt.ws/
Uniquorn/
VAExprs/
VCFArray/
VDJdive/
VERSO/
VaSP/
VanillaICE/
VarCon/
VariantAnnotation/
VariantExperiment/
VariantFiltering/
VegaMC/
VennDetail/
ViSEAGO/
Voyager/
VplotR/
Wrench/
XDE/
XINA/
XNAString/
Xeva/
ZygosityPredictor/
a4/
a4Classif/
a4Core/
a4Preproc/
a4Reporting/
aCGH/
abseqR/
acde/
adSplit/
adductomicsR/
affycomp/
aggregateBioVar/
agilp/
airpart/
alabaster/
alabaster.base/
alabaster.bumpy/
alabaster.mae/
alabaster.matrix/
alabaster.ranges/
alabaster.sce/
alabaster.schemas/
alabaster.se/
alabaster.spatial/
alabaster.string/
alabaster.vcf/
alevinQC/
amplican/
annaffy/
annmap/
annotate/
annotationTools/
annotatr/
anota/
anota2seq/
antiProfiles/
apComplex/
apeglm/
appreci8R/
artMS/
atSNP/
atena/
attract/
autonomics/
awst/
bacon/
ballgown/
bambu/
bamsignals/
banocc/
barcodetrackR/
basecallQC/
basilisk/
basilisk.utils/
batchelor/
bayNorm/
bcSeq/
beachmat/
beadarray/
beadarraySNP/
beer/
benchdamic/
bioCancer/
bioDist/
bioassayR/
biobroom/
biobtreeR/
biocGraph/
biocViews/
biocthis/
biodb/
biodbChebi/
biodbExpasy/
biodbHmdb/
biodbKegg/
biodbLipidmaps/
biodbMirbase/
biodbNcbi/
biodbNci/
biodbUniprot/
biomaRt/
biomformat/
biosigner/
biotmle/
biovizBase/
blacksheepr/
blima/
bluster/
bnbc/
brainflowprobes/
branchpointer/
breakpointR/
brendaDb/
bsseq/
bugsigdbr/
bumphunter/
cBioPortalData/
cTRAP/
calm/
canceR/
cancerclass/
cardelino/
casper/
categoryCompare/
cbaf/
cbpManager/
ccImpute/
ccfindR/
ccmap/
ceRNAnetsim/
celaref/
celda/
cellbaseR/
cellity/
cellmigRation/
cellxgenedp/
censcyt/
cfDNAPro/
cfTools/
cghMCR/
chihaya/
chimeraviz/
chipenrich/
chipseq/
chopsticks/
chromDraw/
chromPlot/
chromVAR/
chromstaR/
cicero/
circRNAprofiler/
cisPath/
cleanUpdTSeq/
cleaver/
clevRvis/
cliProfiler/
clippda/
clipper/
clst/
clstutils/
clustComp/
clusterExperiment/
clusterProfiler/
clusterStab/
clustifyr/
cmapR/
cn.farms/
cn.mops/
cnvGSA/
coGPS/
coMET/
coMethDMR/
coRdon/
codelink/
cogena/
cogeqc/
cola/
comapr/
combi/
compEpiTools/
compcodeR/
concordexR/
condiments/
consICA/
consensus/
consensusDE/
consensusOV/
consensusSeekeR/
contiBAIT/
conumee/
convert/
copa/
corral/
coseq/
cosmosR/
countsimQC/
covEB/
covRNA/
cpvSNP/
cqn/
crisprBase/
crisprBowtie/
crisprBwa/
crisprDesign/
crisprScore/
crisprVerse/
crisprViz/
crlmm/
csaw/
csdR/
ctc/
ctsGE/
cummeRbund/
customCMPdb/
customProDB/
cyanoFilter/
cycle/
cytoKernel/
cytoMEM/
cytofQC/
cytolib/
cytomapper/
cytoviewer/
dStruct/
dada2/
dagLogo/
dcanr/
ddCt/
ddPCRclust/
dearseq/
debCAM/
debrowser/
decompTumor2Sig/
decontam/
deconvR/
decoupleR/
deepSNV/
deltaCaptureC/
deltaGseg/
demuxSNP/
demuxmix/
densvis/
derfinder/
derfinderHelper/
derfinderPlot/
destiny/
diffGeneAnalysis/
diffHic/
diffcyt/
diffuStats/
diggit/
dir.expiry/
discordant/
distinct/
dittoSeq/
divergence/
dks/
doseR/
doubletrouble/
drawProteins/
drugTargetInteractions/
dupRadar/
dyebias/
easier/
easyRNASeq/
easyreporting/
ecolitk/
edge/
edgeR/
eds/
eiR/
eisaR/
enhancerHomologSearch/
enrichplot/
ensembldb/
epialleleR/
epidecodeR/
epigenomix/
epigraHMM/
epimutacions/
epistack/
epistasisGA/
epivizr/
epivizrChart/
epivizrData/
epivizrServer/
epivizrStandalone/
erccdashboard/
erma/
esATAC/
escape/
escheR/
esetVis/
eudysbiome/
evaluomeR/
exomeCopy/
extraChIPs/
fCCAC/
fCI/
fabia/
factDesign/
factR/
famat/
fastLiquidAssociation/
fastreeR/
fastseg/
fcScan/
fdrame/
fedup/
fgga/
fgsea/
fishpond/
flowAI/
flowBeads/
flowBin/
flowCHIC/
flowClean/
flowClust/
flowCore/
flowCut/
flowCyBar/
flowDensity/
flowFP/
flowGate/
flowGraph/
flowMatch/
flowMeans/
flowMerge/
flowPeaks/
flowPloidy/
flowPlots/
flowSpecs/
flowStats/
flowTime/
flowTrans/
flowVS/
flowViz/
flowWorkspace/
flowcatchR/
fmcsR/
fmrs/
fobitools/
frenchFISH/
gCrisprTools/
gaga/
gage/
gaggle/
garfield/
gcapc/
gcatest/
gdsfmt/
geNetClassifier/
gemini/
gemma.R/
genArise/
geneAttribution/
geneClassifiers/
geneRecommender/
geneRxCluster/
geneXtendeR/
genefilter/
genefu/
geneplast/
geneplotter/
genoCN/
genomation/
genomeIntervals/
genomes/
genomicInstability/
gep2pep/
getDEE2/
geva/
ggbio/
ggcyto/
ggmanh/
ggmsa/
ggspavis/
ggtree/
ggtreeDendro/
ggtreeExtra/
girafe/
glmGamPoi/
glmSparseNet/
globalSeq/
globaltest/
gmapR/
gmoviz/
goProfiles/
goSTAG/
goSorensen/
goTools/
goseq/
gpls/
gpuMagic/
granulator/
graper/
graph/
graphite/
groHMM/
gsean/
gtrellis/
gwascat/
gwasurvivr/
h5vc/
hapFabia/
hca/
heatmaps/
hermes/
hiAnnotator/
hiReadsProcessor/
hierGWAS/
hierinf/
hipathia/
hmdbQuery/
hopach/
hpar/
hummingbird/
hyperdraw/
iASeq/
iBBiG/
iBMQ/
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