VERSION 2.4.1
------------------------
   o A vignette modified.

VERSION 2.4.0
------------------------
   o Regularizer parameter (L2_A/L1_A) was added in cellCellDecomp() ("ntd", "ntd2").
   o Multilinear CX Decompotision was added in cellCellDecomp() ("cx").
   o convertNCBIGeneID is removed.
   o The vignettes were modified.
   o Support of LRBase.XXX.eg.db-type packages is completely deprecated

VERSION 2.0.0
------------------------
   o Extended to use the version 2.0.0 of LRBase.XXX.eg.db-type packages
   o Omitted typing Enter-key many times to perform example('cellCellReport')
   o lr.evidence option was added in cellCellRanks() and cellCellDecomp() to select ligand-receptor databases to construct CCI-tensor (cf. Evidence code: https://github.com/rikenbit/lrbase-workflow)
   o The L-R evidence was embeded in the HTML report.
   o The bug related to the hyper-link was fixed in .hyperLinks.
   o Auto library installation/loading for MeSH.XXX.eg.db. Note that this function is based on the NCBI Taxonomy ID embedded in METATDATA table in the sqlite3 file of LRBase.XXX.eg.db.
   o The order of the parameters of cellCellSetting were changed as cellCellSetting(sce, lrbase, label, lr.evidence="all", color=NULL), and color parameter was changed as a optional parameter. If it is not specified, the color is automatically selected.
   o The way to specify the celltype label was changed in cellCellSetting.
   o The vignettes were modified.
   o The convertNCBIGeneID is deprecated. The same functionality can be available as scTGIF::convertRowID instead.

VERSION 1.4.1-3
------------------------
   o A bug was fixed in .cellCellDecomp.Halpern()

VERSION 1.4.0 (Bioconductor 3.11)
------------------------
   o verbose parameter was added in cellCellRank() and cellCellDecomp()
   o set.seed(1234) was added in example and vignette
   o .cellCellDecomp.CabelloAguilar() and .cellCellDecomp.Halpern() were added
   o The num.iter 300　of NTD was changed to 30
   o schex package was imported for visualing all the two dimensional gene plots
   o The rule of cellCellRanks() based on the singular value of SVD was changed to a reconstruction error based rule, using NMF with matricised tensor in each mode
   o The CCI-tensor is normalized in each frontral slice so that the total value is 1 (.frontal.normalization)

VERSION 1.2.1
------------------------
   o Some bugs were fixed

VERSION 1.2.0 (Bioconductor 3.10)
------------------------
   o goenrich, meshenrich, reactomeenrich, doenrich, ncgenrich, and dgnenrich in cellCellReport() were added
   o A bug related in sparse matrix in cellCellSetting() was fixed
   o All the vignettes were updated
   o A vignette for reanalysis of the results of scTensor was added
   o Some bugs were fixed

VERSION 1.0.13
------------------------
   o Gene-gene network based on visNetwork was introduced

VERSION 1.0.11 - 1.0.12
------------------------
   o Some bugs were fixed

VERSION 1.0.10
------------------------
   o The tensor decomposition model was changed from non-negative Tucker3 to non-negative Tucker2
   o assayNames option was added to specify which normalized assay data user want to use
   o ftt option was removed (any normalization can be performed instead)

VERSION 1.0.7 - 1.0.9
------------------------
   o Some bugs were fixed

VERSION 1.0.6
------------------------
   o Replaced Dependency against biomaRt by AnnotationHub

VERSION 1.0.3 - 1.0.5
------------------------
   o Some bugs were fixed

VERSION 1.0.2
------------------------
   o Added upper in cellCellReport()
   o Table grid lines in {ligand,receptor}*.Rmd were added
   o Some bugs were fixed

VERSION 1.0.1
------------------------
   o Some bugs were fixed
   o Three vignettes were added
   o convertToNCBIGeneID() to ID conversion of input matrix

VERSION 1.0.0 (Bioconductor 3.9)
------------------------
   o Package release

VERSION 0.99.22
------------------------
   o newCCSParams(), getParam(), setParam(), and cellCellSimulate() were added
   o The hyperlinks to CMap (Connectivity Map) were embedded in the HTML report

VERSION 0.99.21
------------------------
   o Some bugs were fixed

VERSION 0.99.18
------------------------
   o Added Enrichment Analysis in cellCellReport()

VERSION 0.99.15
------------------------
   o Accepted in BioC 3.9

VERSION 0.99.6 to 0.99.14
------------------------
   o Revised and modified some parts

VERSION 0.99.0
------------------------
   o Package released