tweeDEseq

DOI: 10.18129/B9.bioc.tweeDEseq  

This is the development version of tweeDEseq; for the stable release version, see tweeDEseq.

RNA-seq data analysis using the Poisson-Tweedie family of distributions

Bioconductor version: Development (3.18)

Differential expression analysis of RNA-seq using the Poisson-Tweedie family of distributions.

Author: Juan R Gonzalez <jrgonzalez at creal.cat> and Mikel Esnaola <mesnaola at creal.cat> (with contributions from Robert Castelo <robert.castelo at upf.edu>)

Maintainer: Juan R Gonzalez <jrgonzalez at creal.cat>

Installation

To install this package, start R (version "4.3") and enter:

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

# The following initializes usage of Bioc devel
BiocManager::install(version='devel')

BiocManager::install("tweeDEseq")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

PDF		Reference Manual

Details

biocViews	DifferentialExpression, ImmunoOncology, RNASeq, Sequencing, Software, StatisticalMethod
Version	1.45.0
In Bioconductor since	BioC 2.9 (R-2.14) (11.5 years)
License	GPL (>= 2)
Depends	R (>= 2.12.0)
Imports	MASS, limma, edgeR, parallel, cqn
LinkingTo
Suggests	tweeDEseqCountData, xtable
SystemRequirements
Enhances
URL	http://www.creal.cat/jrgonzalez/software.htm
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Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package
Windows Binary
macOS Binary (x86_64)
macOS Binary (arm64)
Source Repository	git clone https://git.bioconductor.org/packages/tweeDEseq
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/tweeDEseq
Package Short Url	https://bioconductor.org/packages/tweeDEseq/
Package Downloads Report	Download Stats