snapCGH

DOI: 10.18129/B9.bioc.snapCGH  

This is the development version of snapCGH; for the stable release version, see snapCGH.

Segmentation, normalisation and processing of aCGH data

Bioconductor version: Development (3.18)

Methods for segmenting, normalising and processing aCGH data; including plotting functions for visualising raw and segmented data for individual and multiple arrays.

Author: Mike L. Smith, John C. Marioni, Steven McKinney, Thomas Hardcastle, Natalie P. Thorne

Maintainer: John Marioni <marioni at ebi.ac.uk>

Installation

To install this package, start R (version "4.3") and enter:

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

# The following initializes usage of Bioc devel
BiocManager::install(version='devel')

BiocManager::install("snapCGH")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

PDF		Reference Manual

Details

biocViews	CopyNumberVariation, Microarray, Preprocessing, Software, TwoChannel
Version	1.71.0
In Bioconductor since	BioC 1.8 (R-2.3) (17 years)
License	GPL
Depends	R (>= 3.5.0)
Imports	aCGH, cluster, DNAcopy, GLAD, graphics, grDevices, limma, methods, stats, tilingArray, utils
LinkingTo
Suggests
SystemRequirements
Enhances
URL
Depends On Me
Imports Me	ADaCGH2
Suggests Me	beadarraySNP
Links To Me
Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package
Windows Binary	snapCGH_1.71.0.zip
macOS Binary (x86_64)
macOS Binary (arm64)
Source Repository	git clone https://git.bioconductor.org/packages/snapCGH
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/snapCGH
Bioc Package Browser	https://code.bioconductor.org/browse/snapCGH/
Package Short Url	https://bioconductor.org/packages/snapCGH/
Package Downloads Report	Download Stats