beachmat

DOI: 10.18129/B9.bioc.beachmat  

This is the development version of beachmat; for the stable release version, see beachmat.

Compiling Bioconductor to Handle Each Matrix Type

Bioconductor version: Development (3.18)

Provides a consistent C++ class interface for reading from a variety of commonly used matrix types. Ordinary matrices and several sparse/dense Matrix classes are directly supported, along with a subset of the delayed operations implemented in the DelayedArray package. All other matrix-like objects are supported by calling back into R.

Author: Aaron Lun [aut, cre], Hervé Pagès [aut], Mike Smith [aut]

Maintainer: Aaron Lun <infinite.monkeys.with.keyboards at gmail.com>

Installation

To install this package, start R (version "4.3") and enter:

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

# The following initializes usage of Bioc devel
BiocManager::install(version='devel')

BiocManager::install("beachmat")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("beachmat")

 

HTML	R Script	Developer guide
PDF		Reference Manual
Text		NEWS

Details

biocViews	DataImport, DataRepresentation, Infrastructure, Software
Version	2.17.4
In Bioconductor since	BioC 3.6 (R-3.4) (5.5 years)
License	GPL-3
Depends
Imports	methods, DelayedArray(>= 0.27.2), BiocGenerics, Matrix, Rcpp
LinkingTo	Rcpp
Suggests	testthat, BiocStyle, knitr, rmarkdown, rcmdcheck, BiocParallel, HDF5Array
SystemRequirements	C++17
Enhances
URL	https://github.com/tatami-inc/beachmat
BugReports	https://github.com/tatami-inc/beachmat/issues
Depends On Me
Imports Me	batchelor, BiocSingular, DropletUtils, mumosa, scater, scran, scuttle, SingleR
Suggests Me	bsseq, glmGamPoi, mbkmeans, PCAtools, scCB2
Links To Me	BiocSingular, bsseq, DropletUtils, glmGamPoi, mbkmeans, PCAtools, scran, scuttle, SingleR
Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	beachmat_2.17.4.tar.gz
Windows Binary	beachmat_2.17.3.zip
macOS Binary (x86_64)	beachmat_2.17.2.tgz
macOS Binary (arm64)
Source Repository	git clone https://git.bioconductor.org/packages/beachmat
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/beachmat
Bioc Package Browser	https://code.bioconductor.org/browse/beachmat/
Package Short Url	https://bioconductor.org/packages/beachmat/
Package Downloads Report	Download Stats