DeMixT

DOI: 10.18129/B9.bioc.DeMixT  

This is the development version of DeMixT; for the stable release version, see DeMixT.

Cell type-specific deconvolution of heterogeneous tumor samples with two or three components using expression data from RNAseq or microarray platforms

Bioconductor version: Development (3.18)

DeMixT is a software package that performs deconvolution on transcriptome data from a mixture of two or three components.

Author: Zeya Wang <zw17.rice at gmail.com>, Shaolong Cao<scao at mdanderson.org>, Wenyi Wang <wwang7 at at mdanderson.org>

Maintainer: Shuai Guo <shuai.guo at uth.tmc.edu>

Installation

To install this package, start R (version "4.3") and enter:

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

# The following initializes usage of Bioc devel
BiocManager::install(version='devel')

BiocManager::install("DeMixT")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

PDF		Reference Manual

Details

biocViews	Classification, Coverage, GeneExpression, Microarray, Sequencing, Software, StatisticalMethod, TissueMicroarray
Version	1.17.0
In Bioconductor since	BioC 3.9 (R-3.6) (4 years)
License	GPL-3
Depends	R (>= 3.6.0), parallel, Rcpp (>= 1.0.0), SummarizedExperiment, knitr, KernSmooth, matrixcalc, rmarkdown, DSS, dendextend, psych, sva
Imports	matrixStats, stats, truncdist, base64enc, ggplot2
LinkingTo	Rcpp
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Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package
Windows Binary	DeMixT_1.17.0.zip
macOS Binary (x86_64)	DeMixT_1.17.0.tgz
macOS Binary (arm64)
Source Repository	git clone https://git.bioconductor.org/packages/DeMixT
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/DeMixT
Bioc Package Browser	https://code.bioconductor.org/browse/DeMixT/
Package Short Url	https://bioconductor.org/packages/DeMixT/
Package Downloads Report	Download Stats