# epidecodeR: a functional exploration tool for epigenetic and epitranscriptomic regulation

## Documentation for package ‘epidecodeR’ version 1.9.0

- DESCRIPTION file.
- User guides, package vignettes and other documentation.
- Package NEWS.

## Help Pages

epidecodeR | Analysis function for generating epidecodeR object. This function distributes dysregulated genes into user defined groups and calculates cumulative probabilities and ANOVA test statistics for significance testing in difference of log2FC means between groups of dysregulated genes
epidecodeR-class | epidecodeR object - a S4 class object
get_empirical_table | get_empirical_table method
get_empirical_table-method | get_empirical_table method
get_eventcounts | get_eventcounts method
get_eventcounts-method | get_eventcounts method
get_grpcounts | get_grpcounts method
get_grpcounts-method | get_grpcounts method
get_grptables | get_grptables method
get_grptables-method | get_grptables method
get_signtest | get_signtest method
get_signtest-method | get_signtest method
get_theoretical_table | get_theoretical_table method
get_theoretical_table-method | get_theoretical_table method
makeplot | Generate CDF plot using epidecodeR object generated using epidecodeR function
plot_test | Generates boxplot of distribution of log2FC of dysregulated genes and adjusted P value of signficance test of difference in mean log2FC between groups computed using one-way ANOVA test