Package: easyRNASeq
Version: 2.37.0
Date: 2020-11-25
Type: Package
Title: Count summarization and normalization for RNA-Seq data
Author: Nicolas Delhomme, Ismael Padioleau, Bastian Schiffthaler, Niklas Maehler
Maintainer: Nicolas Delhomme <nicolas.delhomme@umu.se>
Description: Calculates the coverage of high-throughput short-reads against
    a genome of reference and summarizes it per feature of interest (e.g. exon,
    gene, transcript). The data can be normalized as 'RPKM' or by the 'DESeq'
    or 'edgeR' package.
Imports: Biobase (>= 2.50.0), BiocFileCache (>= 1.14.0), BiocGenerics
        (>= 0.36.0), BiocParallel (>= 1.24.1), biomaRt (>= 2.46.0),
        Biostrings (>= 2.58.0), edgeR (>= 3.32.0), GenomeInfoDb (>=
        1.26.0), genomeIntervals (>= 1.46.0), GenomicAlignments (>=
        1.26.0), GenomicRanges (>= 1.42.0), SummarizedExperiment (>=
        1.20.0), graphics, IRanges (>= 2.24.0), LSD (>= 4.1-0), locfit,
        methods, parallel, rappdirs (>= 0.3.1), Rsamtools (>= 2.6.0),
        S4Vectors (>= 0.28.0), ShortRead (>= 1.48.0), utils
Suggests: BiocStyle (>= 2.18.0), BSgenome (>= 1.58.0),
        BSgenome.Dmelanogaster.UCSC.dm3 (>= 1.4.0), curl, knitr,
        rmarkdown, RUnit (>= 0.4.32)
License: Artistic-2.0
LazyLoad: yes
VignetteBuilder: knitr
biocViews: GeneExpression, RNASeq, Genetics, Preprocessing,
        ImmunoOncology
RoxygenNote: 7.1.1
Encoding: UTF-8
git_url: https://git.bioconductor.org/packages/easyRNASeq
git_branch: devel
git_last_commit: 5bbee74
git_last_commit_date: 2023-04-25
Date/Publication: 2023-05-04
NeedsCompilation: no
Packaged: 2023-05-04 23:52:09 UTC; biocbuild
Built: R 4.3.0; ; 2023-05-05 13:34:17 UTC; windows
