Package: TimiRGeN
Type: Package
Title: Time sensitive microRNA-mRNA integration, analysis and network
        generation tool
Version: 1.11.0
Authors@R: person(given = "Krutik", family = "Patel", role = c("aut", "cre"), email = "krutik.patel@newcastle.ac.uk")
Description: TimiRGeN (Time Incorporated miR-mRNA Generation of Networks) is a novel R package which functionally analyses and integrates time course miRNA-mRNA differential expression data. This tool can generate small networks within R or export results into cytoscape or pathvisio for more detailed network construction and hypothesis generation. This tool is created for researchers that wish to dive deep into time series multi-omic datasets. TimiRGeN goes further than many other tools in terms of data reduction. Here, potentially hundreds-of-thousands of potential miRNA-mRNA interactions can be whittled down into a handful of high confidence  miRNA-mRNA interactions affecting a signalling pathway, across a time course.
License: GPL-3
Encoding: UTF-8
LazyData: true
RoxygenNote: 7.1.1
Depends: R (>= 4.1), Mfuzz, MultiAssayExperiment
Imports: biomaRt, clusterProfiler, dplyr (>= 0.8.4), FreqProf, gtools
        (>= 3.8.1), gplots, ggdendro, gghighlight, ggplot2, graphics,
        grDevices, igraph (>= 1.2.4.2), RCy3, readxl, reshape2,
        rWikiPathways, scales, stats, tidyr (>= 1.0.2), stringr (>=
        1.4.0)
Suggests: BiocManager, kableExtra, knitr (>= 1.27), org.Hs.eg.db,
        org.Mm.eg.db, testthat, rmarkdown
VignetteBuilder: knitr
biocViews: Clustering, miRNA, Network, Pathways, Software, TimeCourse,
        Visualization
URL: https://github.com/Krutik6/TimiRGeN/
BugReports: https://github.com/Krutik6/TimiRGeN/issues
git_url: https://git.bioconductor.org/packages/TimiRGeN
git_branch: devel
git_last_commit: d232241
git_last_commit_date: 2023-04-25
Date/Publication: 2023-05-04
NeedsCompilation: no
Packaged: 2023-05-05 03:37:46 UTC; biocbuild
Author: Krutik Patel [aut, cre]
Maintainer: Krutik Patel <krutik.patel@newcastle.ac.uk>
Built: R 4.3.0; ; 2023-05-05 14:35:09 UTC; windows
