PICS                    Estimation of binding site positions
bam2gr                  Pre-process bam files
candidate.region        Identify candidate regions
makeGRangesOutput       Export a PICS object to GRanges
pics-class              PICS class
pics-generics           Generics associated with pics classes
picsError-class         picsError class
picsFDR                 Estimate the FDR
picsList-class          List of PICS objects
plot-FDR                Plot PICS FDR
plot-pics               Plot methods for PICS objects
segChrRead              Segmentation of paired-end sequencing data
segReads-class          Classes and functions to segment the genome in
                        candidate regions
segReadsGeneric         Perform genome segmentation depending
segReadsListPE-class    Class and methods for list of candidate regions
                        from paired-end data
segReadsPE-class        Classe and methods for candidate regions from
                        paired-end data
segmentPICS             Segment the genome into candidate regions
setParaEM               List of parameters for the EM algorithm that
                        can be used as an argument of PICS.
setParaPrior            List of parameters that can be used as an
                        argument of PICS.
summarySeg              Summarize segmentList objects
