bcb46671f9de67f4c98c54cd2fb7b0a6 *CITATION
798ca05a379090b7f199ab7fe1c9a6e0 *DESCRIPTION
d7bef1091553b8d404d3cabd025ccbfc *INDEX
e769261643b89aa62a434f90c2001032 *Meta/Rd.rds
dff0c21365af97a4870480e08afc2958 *Meta/features.rds
9a01b7d011fcaadbdf793c45a0d1d902 *Meta/hsearch.rds
3906af24cd30698eda2af116c95e0314 *Meta/links.rds
061e3ca99677e3fdc1b6a35255c224e1 *Meta/nsInfo.rds
92bdc4c309ef772190f1d5ad71cc8df1 *Meta/package.rds
2ee254059b88b72280eee49e252aa20b *Meta/vignette.rds
be218ab5f8593f82380357fb87629d5c *NAMESPACE
b67d35e54d50a213d03c903c2c5d153d *NEWS
d6c68f1fe41ced6e98a766a3757313da *R/GenomicAlignments
1f44afaf60bfb8341c3fe54b4bbcdb6f *R/GenomicAlignments.rdb
4e711c65934341bb7cfd9c3cb0e73d6d *R/GenomicAlignments.rdx
87c1aee70a53b2832ae0a7b1d1ea22d0 *doc/GenomicAlignmentsIntroduction.R
6e39e7a38e67414501fb32634a4052aa *doc/GenomicAlignmentsIntroduction.Rnw
d1554f7917761131dd68fe00866eca1e *doc/GenomicAlignmentsIntroduction.pdf
0d307bd84b97e9958f7d683066cc6792 *doc/OverlapEncodings.R
68888481e2bba183e3408e111907d416 *doc/OverlapEncodings.Rnw
14c9923324565e033d1acbc670ffeda3 *doc/OverlapEncodings.pdf
fefe6ab83378e1021ae62b51ca854ef2 *doc/WorkingWithAlignedNucleotides.R
7ffa5eec2eb7b955ca22579bb869bff8 *doc/WorkingWithAlignedNucleotides.Rnw
e45a75b108afd92abbfcf58502bbc364 *doc/WorkingWithAlignedNucleotides.pdf
9d115c15a28049cb12fc89f67565a0c1 *doc/index.html
1c40ffe1d41ef7d3f3821184383ae85e *doc/summarizeOverlaps.R
5398e425480c1f764c0dce679bd32525 *doc/summarizeOverlaps.Rnw
c03bca6446bea6c8c25f645b9030a9d3 *doc/summarizeOverlaps.pdf
1c380f8159fda8fad5d0d4902ae9ea23 *extdata/sm_treated1.bam
af83f784077fcced98e3603bb7ad7a4e *extdata/sm_untreated1.bam
9b75e3be5ca1e1838e23e9afc5de094b *help/AnIndex
88d2d50ee3bf879d0aaeb4944d168e67 *help/GenomicAlignments.rdb
c018608951c8e081f8b40145fa9bef60 *help/GenomicAlignments.rdx
c1b73d7c850a4db5ab672a6b888f3edb *help/aliases.rds
da20a32533ffc924a5934639b9d278b5 *help/paths.rds
946e939c7cd7b3d00b25f7cf5574f8e1 *html/00Index.html
8b9362669af13540a86a3ac6cf22f99d *html/R.css
bad25df07a794ae8cf7e0d36a59b0d0a *libs/x64/GenomicAlignments.dll
22193c72fc07c32f876acee489f2ce96 *unitTests/test_GAlignments-class.R
b02dc164314a2514a39276e822352122 *unitTests/test_GAlignmentsList-class.R
8ebc949e316f84ed21c18fdf971de87f *unitTests/test_cigar-utils.R
1eec99e806cfe128483fd803bcfdd43f *unitTests/test_coordinate-mapping-methods.R
229bfd98328fafca3f1ad0a5e5e1d307 *unitTests/test_findSpliceOverlaps-methods.R
03c20128d1742334efd9c564122e1e4b *unitTests/test_intra-range-methods.R
a369c93b31e2e090aba36dcab66fa759 *unitTests/test_readGAlignmentPairs.R
d6c4737a308c9831ecaff1d0bbd842d5 *unitTests/test_readGAlignments.R
9610e31d42cdcec687fb5f4fb264b906 *unitTests/test_readGAlignmentsList.R
3ee2246e46dee0999386dd9538c4a5cc *unitTests/test_summarizeOverlaps-methods.R
