Package: GeneRegionScan
Version: 1.57.0
Date: 2009-10-16
Title: GeneRegionScan
Author: Lasse Folkersen, Diego Diez
Maintainer: Lasse Folkersen <lasfol@cbs.dtu.dk>
Depends: methods, Biobase (>= 2.5.5), Biostrings
Imports: S4Vectors (>= 0.9.25), Biobase (>= 2.5.5), affxparser,
        RColorBrewer, Biostrings
Suggests: BSgenome, affy, AnnotationDbi
LazyLoad: yes
Description: A package with focus on analysis of discrete regions of the genome. This package is useful for investigation of one or a few genes using Affymetrix data, since it will extract probe level data using the Affymetrix Power Tools application and wrap these data into a ProbeLevelSet. A ProbeLevelSet directly extends the expressionSet, but includes additional information about the sequence of each probe and the probe set it is derived from. The package includes a number of functions used for plotting these probe level data as a function of location along sequences of mRNA-strands. This can be used for analysis of variable splicing, and is especially well suited for use with exon-array data.  
License: GPL (>= 2)
biocViews: Microarray, DataImport, SNP, OneChannel, Visualization
git_url: https://git.bioconductor.org/packages/GeneRegionScan
git_branch: devel
git_last_commit: 59536b1
git_last_commit_date: 2023-04-25
Date/Publication: 2023-04-26
NeedsCompilation: no
Packaged: 2023-04-26 23:00:12 UTC; biocbuild
Built: R 4.3.0; ; 2023-04-27 11:46:22 UTC; windows
