94dfe786d6476283636d084a6246b5b1 *CITATION
1c2191f48f894bdf81a87eb6a97f73a7 *DESCRIPTION
005ddc5be20850dfa05c4c38fa7421f9 *INDEX
947eafbf64b98b415adac08fdd4ad8a4 *Meta/Rd.rds
d8a1f4b6fde41420684585aa8f93b0c9 *Meta/data.rds
dff0c21365af97a4870480e08afc2958 *Meta/features.rds
36d986394e5201dd6119ebf552d0bd03 *Meta/hsearch.rds
a2e1f6a4ec560bb754eb2c8444cfd671 *Meta/links.rds
0809c29ed09764ed13c32e0bd7b566f7 *Meta/nsInfo.rds
90fe0d5fa4fe6bc2a355502236c6f391 *Meta/package.rds
9a42c9c1c52d8d98729a8ec25eda3d1d *Meta/vignette.rds
65c9e65361476584612cd7e683689897 *NAMESPACE
54341a3c829bb8161d403f820c4cc0e0 *NEWS
d6c68f1fe41ced6e98a766a3757313da *R/GUIDEseq
8b6631139116bf953becab51ce7229cc *R/GUIDEseq.rdb
898cbd6a6fbe660d83d88eb7ed03d191 *R/GUIDEseq.rdx
0378cd0305c3d239fdcf7eb8aa32db92 *data/peaks.gr.rda
89b8ffe8526fd20df18dcc14e1df8ba3 *data/uniqueCleavageEvents.rda
ecae13ce3b098f906f6b7ae9d8b9d3df *doc/GUIDEseq.R
dc5bf62a5d76a7bb8054f6c66256a89a *doc/GUIDEseq.Rnw
ffe37a27b9c2fc7306878614e9a571a1 *doc/GUIDEseq.pdf
447fa9130ef5025f4d14ce41df2b22a8 *doc/index.html
6d462cbcf8462e0618db482985b5dc07 *extdata/1450-PlusMinusPeaksMerged.bed
2d16d206663d3af40464747ff656df01 *extdata/1450-chr14-chr2-bulge-test.bed
970b5ab053ab03e33d43fba1b391db2b *extdata/1450.fa
6ae5cc03a9064b3b8c045974e6312493 *extdata/1450peakSeq.RDS
b0c7dfbde051e95b85ec0614fa4f34ea *extdata/InsertionInOfftarget.RDS
50297a8719b488896579a84003599b9e *extdata/NatureBiot2016SuppTable19DoenchRoot.xlsx
4be7161445eba0fb1efe41baf9801ce0 *extdata/OT71_Bulge_example.xlsx
b923ac992fe938c6932ce93899d61cc2 *extdata/PEtagAnalysis_testthat.RDS
9e99a4998da29c0001658021a5163246 *extdata/T2.fa
652b596e1a437cd3070bc7afb64c423f *extdata/T2plus100OffTargets.bed
66e1e37c8fcbad3c1449e64470a6dff4 *extdata/UMI-HEK293_site4_R1.txt
ce076916c5f6413f9a8d3ada640842d6 *extdata/UMI-HEK293_site4_chr13.txt
dd11b41829b142e2e342c1b218ff6d9a *extdata/UMI-testGetUmi.fastq
c8234ec0d8ba00da7a812b2cd3ebffb0 *extdata/alns.RDS
fda6af97d15bbce462989ce927afab3c *extdata/bowtie2.HEK293_site4.sort.bed
66bbe562e6f541fb3e18109943e4634f *extdata/bowtie2.HEK293_site4_chr13.sort.bam
b6b49683d0ad761767064a22b9220dfe *extdata/bowtie2.HEK293_site4_chr13.sort.bed
17ace7845a7843ed3b20e253f184e194 *extdata/cleavages_testthat.RDS
d098930d2fc4ffa443cab7f7f537dd27 *extdata/consecutiveDNABulge.RDS
7d8203570ded2c56bb3a6c1ab7cf382d *extdata/consecutiveDNABulge.bed
3cc607f608dd2f8fb641553e22b34be1 *extdata/consecutiveDNABulge2.RDS
e00a39c599e36b5edc6781b639d2f1c0 *extdata/forVisualization/mergedOffTargets.txt
bd7f52a41a93c4ae91673d151c4044aa *extdata/forVisualization/offTargetsInPeakRegions.xls
73a8dc03ae19de77802396c5adca3e93 *extdata/gRNA-PlusMinusPeaksMerged.bed
7f16701fa8d5ff205f1d1eaf57a2f000 *extdata/gRNA.fa
d73caa0b0f41bf4fc8a3f6e232e71ac2 *extdata/getUmi.pl
0d4bd203578b0450c15773995ba57a4a *extdata/p5.index
49f921d7e27b31032c29a9f7d960d212 *extdata/p7.index
966348620cea51b2c725c536742096e4 *extdata/pa.f.RDS
57df1ec44c80e9706f306f0b9a321c9b *extdata/pa.r.RDS
fdd87fb94baff601d388cf47d0a082f5 *extdata/sample1-17/offTargetsInPeakRegions.xls
94e47eb903856eec308dce7801baf1c8 *extdata/sample2-18/offTargetsInPeakRegions.xls
f502d2ebfaac264dd8982782083071d1 *extdata/sample3-19/offTargetsInPeakRegions.xls
d20361464e4c976c15ee66c4106dfddd *extdata/sample4-20/offTargetsInPeakRegions.xls
4ccbab642cde1950063994c71317d406 *extdata/sample5-21/offTargetsInPeakRegions.xls
1a7c311a1dc404e4581cb1b2d778145b *extdata/sample6-22/offTargetsInPeakRegions.xls
c7fc6e066b15b93c5349835045947ddc *extdata/sample7-23/offTargetsInPeakRegions.xls
c9aad645dfb7c07f9778c9cd961f7773 *extdata/subjects2.RDS
b9580f92a83bba82392585d328d52606 *extdata/testCFDscoringWithBulge.RDS
12097d993bfe37d33ba51cac7946a0c3 *extdata/testGetUmi/testGetUmi.fastq
cfd93742b1771fd018675c36d9f87c85 *extdata/testPeaks.rda
0dce18622a20f7c2155b17d356685844 *extdata/testbothRunSum.rda
d26ff84d4ab40e0a2b37c57fee197c0d *help/AnIndex
f80fd17a103d64a3188875aa95fda4d0 *help/GUIDEseq.rdb
40f2c12f2a7a3539420361e7012bae2d *help/GUIDEseq.rdx
1c76094089c1d03f30ee1559f6556227 *help/aliases.rds
2816a08cc410af3060026b74fbb8003c *help/paths.rds
c6f5e70080161068801c7f450d841307 *html/00Index.html
8b9362669af13540a86a3ac6cf22f99d *html/R.css
