Package: methylInheritance
Version: 1.25.0
Date: 2021-11-21
Title: Permutation-Based Analysis associating Conserved Differentially
        Methylated Elements Across Multiple Generations to a Treatment
        Effect
Description: Permutation analysis, based on Monte Carlo sampling, for
        testing the hypothesis that the number of conserved
        differentially methylated elements, between several
        generations, is associated to an effect inherited from a
        treatment and that stochastic effect can be dismissed.
Authors@R: c(person("Astrid", "Deschênes", email="adeschen@hotmail.com",
        role=c("cre","aut"), comment = c(ORCID = "0000-0001-7846-6749")), 
        person("Pascal", "Belleau", email="pascal_belleau@hotmail.com", 
        role=c("aut"), comment = c(ORCID = "0000-0002-0802-1071")),
        person("Arnaud", "Droit",
        email="arnaud.droit@crchuq.ulaval.ca", role=c("aut")))
Depends: R (>= 3.5)
Imports: methylKit, BiocParallel, GenomicRanges, IRanges, S4Vectors,
        methods, parallel, ggplot2, gridExtra, rebus
Suggests: BiocStyle, BiocGenerics, knitr, rmarkdown, RUnit,
        methInheritSim
Encoding: UTF-8
License: Artistic-2.0
URL: https://github.com/adeschen/methylInheritance
BugReports: https://github.com/adeschen/methylInheritance/issues
VignetteBuilder: knitr
biocViews: BiologicalQuestion, Epigenetics, DNAMethylation,
        DifferentialMethylation, MethylSeq, Software, ImmunoOncology,
        StatisticalMethod, WholeGenome, Sequencing
RoxygenNote: 7.1.1
git_url: https://git.bioconductor.org/packages/methylInheritance
git_branch: devel
git_last_commit: 943d9f7
git_last_commit_date: 2023-04-25
Date/Publication: 2023-05-05
NeedsCompilation: no
Packaged: 2023-05-05 21:07:06 UTC; biocbuild
Author: Astrid Deschênes [cre, aut] (<https://orcid.org/0000-0001-7846-6749>),
  Pascal Belleau [aut] (<https://orcid.org/0000-0002-0802-1071>),
  Arnaud Droit [aut]
Maintainer: Astrid Deschênes <adeschen@hotmail.com>
Built: R 4.3.0; ; 2023-05-06 03:49:10 UTC; unix
