$,Matched-method	Matched
$,MatchedSpectra-method	MatchedSpectra
addMatches	Matched
addMatches,Matched-method	Matched
addProcessing,MatchedSpectra-method	MatchedSpectra
colnames,Matched-method	Matched
colnames,MatchedSpectra-method	MatchedSpectra
CompAnnotationSource	CompAnnotationSource
CompAnnotationSource-class	CompAnnotationSource
CompareSpectraParam	CompareSpectraParam
CompareSpectraParam-class	CompareSpectraParam
CompDbSource	CompDbSource
CompDbSource-class	CompDbSource
endoapply	Matched
endoapply,ANY-method	Matched
endoapply,Matched-method	Matched
filterMatches	Matched
filterMatches,Matched,missing-method	Matched
filterMatches,Matched,ScoreThresholdParam-method	Matched
filterMatches,Matched,SelectMatchesParam-method	Matched
filterMatches,Matched,TopRankedMatchesParam-method	Matched
hidden_aliases	hidden_aliases
lapply,Matched-method	Matched
length,Matched-method	Matched
Mass2MzParam	matchValues
Mass2MzRtParam	matchValues
MassBankSource	CompDbSource
Matched	Matched
Matched-class	Matched
matchedData	Matched
matchedData,Matched-method	Matched
matchedData,MatchedSpectra-method	MatchedSpectra
MatchedSpectra	MatchedSpectra
MatchedSpectra-class	MatchedSpectra
matches	Matched
matchFormula	matchFormula
matchFormula,character,character-method	matchFormula
matchFormula,character,data.frameOrSimilar-method	matchFormula
matchFormula,data.frameOrSimilar,character-method	matchFormula
matchFormula,data.frameOrSimilar,data.frameOrSimilar-method	matchFormula
MatchForwardReverseParam	CompareSpectraParam
MatchForwardReverseParam-class	CompareSpectraParam
matchMz	matchValues
matchSpectra	matchSpectra
matchSpectra,Spectra,CompAnnotationSource,Param-method	CompAnnotationSource
matchSpectra,Spectra,CompDb,Param-method	CompareSpectraParam
matchSpectra,Spectra,CompDbSource,Param-method	CompareSpectraParam
matchSpectra,Spectra,Spectra,CompareSpectraParam-method	CompareSpectraParam
matchSpectra,Spectra,Spectra,MatchForwardReverseParam-method	CompareSpectraParam
matchValues	matchValues
matchValues,data.frameOrSimilar,data.frameOrSimilar,Mass2MzParam-method	matchValues
matchValues,data.frameOrSimilar,data.frameOrSimilar,Mass2MzRtParam-method	matchValues
matchValues,data.frameOrSimilar,data.frameOrSimilar,Mz2MassParam-method	matchValues
matchValues,data.frameOrSimilar,data.frameOrSimilar,Mz2MassRtParam-method	matchValues
matchValues,data.frameOrSimilar,data.frameOrSimilar,MzParam-method	matchValues
matchValues,data.frameOrSimilar,data.frameOrSimilar,MzRtParam-method	matchValues
matchValues,data.frameOrSimilar,data.frameOrSimilar,ValueParam-method	matchValues
matchValues,data.frameOrSimilar,numeric,Mass2MzParam-method	matchValues
matchValues,data.frameOrSimilar,numeric,Mz2MassParam-method	matchValues
matchValues,data.frameOrSimilar,numeric,MzParam-method	matchValues
matchValues,data.frameOrSimilar,numeric,ValueParam-method	matchValues
matchValues,numeric,data.frameOrSimilar,Mass2MzParam-method	matchValues
matchValues,numeric,data.frameOrSimilar,Mz2MassParam-method	matchValues
matchValues,numeric,data.frameOrSimilar,MzParam-method	matchValues
matchValues,numeric,data.frameOrSimilar,ValueParam-method	matchValues
matchValues,numeric,numeric,Mass2MzParam-method	matchValues
matchValues,numeric,numeric,Mz2MassParam-method	matchValues
matchValues,numeric,numeric,ValueParam-method	matchValues
metadata,CompAnnotationSource-method	CompAnnotationSource
metadata,CompDbSource-method	CompDbSource
Mz2MassParam	matchValues
Mz2MassRtParam	matchValues
MzParam	matchValues
MzRtParam	matchValues
plotSpectraMirror,MatchedSpectra-method	MatchedSpectra
pruneTarget	Matched
query	Matched
ScoreThresholdParam	Matched
scoreVariables	Matched
SelectMatchesParam	Matched
setBackend,MatchedSpectra,MsBackend-method	MatchedSpectra
show,CompAnnotationSource-method	CompAnnotationSource
show,CompDbSource-method	CompDbSource
show,Matched-method	Matched
spectraData,MatchedSpectra-method	MatchedSpectra
spectraVariables,MatchedSpectra-method	MatchedSpectra
target	Matched
TopRankedMatchesParam	Matched
validateMatchedSpectra	validateMatchedSpectra
ValueParam	matchValues
whichQuery	Matched
whichTarget	Matched
[,Matched,ANY,ANY,ANY-method	Matched
[,Matched-method	Matched
