f2197fba1e4de84ba27c7aa43c4966a3 *CITATION
b09bd29b2245a0d1804d6c75f0ff3266 *DESCRIPTION
88631637c594701a398e0d0b0c026663 *INDEX
0a1b339c55a6a019994d099e48693c4e *Meta/Rd.rds
4fa0f038773ee9c33b77e3d896ef6112 *Meta/data.rds
dff0c21365af97a4870480e08afc2958 *Meta/features.rds
c92cf4f67779a91437680ced8c852356 *Meta/hsearch.rds
a9f3915392913d428a5c353fac57510c *Meta/links.rds
689aea9dc11a5fbc7966e3edb64fc35b *Meta/nsInfo.rds
b047c43583d4feb9a9a86027dd851586 *Meta/package.rds
ae80b37959c9d88ed59e82ad0351f124 *Meta/vignette.rds
2d6e34925400c05f94f0dd5489da7986 *NAMESPACE
44ae129a9f93f36c44c550c510554cd2 *NEWS.Rd
d6c68f1fe41ced6e98a766a3757313da *R/scPipe
78d20791a4bcf73283811e794bccce42 *R/scPipe.rdb
4d3d9e01cadd149f8e26a313b0089759 *R/scPipe.rdx
1dc17379efee0dc44aee270095903ff5 *data/sc_sample_data.RData
2594a9728f0d35790ec31657b0f9c880 *data/sc_sample_qc.RData
ac19603a1a6495d8d2df963fb91bace6 *doc/index.html
ec01f85686d4ddfa95c90e1318231cf0 *doc/scPipe_atac_tutorial.R
94f0c96d8c0d9b5d5c24cf9ef07dee5c *doc/scPipe_atac_tutorial.Rmd
2ae25c21e2afefe4f58cf49bdebe0650 *doc/scPipe_atac_tutorial.html
84352518295714a7df14e8c578552fb4 *doc/scPipe_tutorial.R
b94fcba73c660f9cce49aa0f084c5413 *doc/scPipe_tutorial.Rmd
3954ece45cc286abc8ea7754566829b2 *doc/scPipe_tutorial.html
339e0225f3294bf2bf89ac33d71a73c2 *extdata/ERCC92.fa
6e4cb84dc35b55f6c26e244c3d518583 *extdata/ERCC92_anno.gff3
5c38f2b5b92fce068413038b6fba8fe5 *extdata/NA_peaks.narrowPeak
e4d66f3d844251c128a1516f99be387c *extdata/annotations/chrom_hg19.sizes.gz
a9e325550e469eae60026d92fc9013e2 *extdata/annotations/chrom_hg38.sizes.gz
bf5bbe4ebba25023151b6aaa47684273 *extdata/annotations/chrom_mm10.sizes.gz
790756b2a525a329d57c43c4739d031c *extdata/annotations/hg19_blacklist.bed.gz
7e400a06268eaf5f0ca7fc2b7b03a206 *extdata/annotations/hg19_enhancer.bed.gz
8cc4a2825386c9ef48f7d86be5330aa1 *extdata/annotations/hg19_promoter.bed.gz
ed122041b44ad545023b01c9bb5bc8b5 *extdata/annotations/hg19_tss.bed.gz
899947fc14cf18264d330c241fbebca8 *extdata/annotations/hg38_blacklist.bed.gz
45598c486015f9e83c2abf37959d84c2 *extdata/annotations/hg38_enhancer.bed.gz
7428cc479aa8040e69991114c910e75c *extdata/annotations/hg38_promoter.bed.gz
23248c8eac286a01f34067d69146ecc6 *extdata/annotations/hg38_tss.bed.gz
6633431d5bcf900b8451dfbecf75be31 *extdata/annotations/mm10_blacklist.bed.gz
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1be4516f437836b23f33793b12dd6d29 *extdata/annotations/mm10_promoter.bed.gz
c8d4558c65c7102a48ec64d5d7ddf10e *extdata/annotations/mm10_tss.bed.gz
e6007becb38885068ee4c1569f11676c *extdata/barcode_anno.csv
80042076f61789a27e8120064fb17615 *extdata/chr21_modified_barcode_1000.csv
8577e8f76719bf43c33a7f7db593ef83 *extdata/ens_tiny_anno.gff3.gz
95dcee5780eae0513826393d7731faf6 *extdata/ens_tiny_anno.gtf.gz
4b69e9071aaebe7e0f0b72faba999836 *extdata/ensembl_hg38_chrY.gtf.gz
2775eff980dad9481fe7170ef11b3b29 *extdata/ensembl_y_tiny.gtf.gz
1ec5e129ea424597706f4b625327c69b *extdata/gen_tiny_anno.gff3.gz
84f6ae29496eb56652f373b91bfef183 *extdata/gen_tiny_anno.gtf.gz
220922b0d0b25aa599770ca139e2d2e1 *extdata/ref_tiny_anno.gff3.gz
a2b210f05cf05d9538be113fdc827e88 *extdata/report_template.Rmd
60ecd0d30f4bb5aee8a052a6051d2e1c *extdata/report_template_slim.Rmd
2e8a9b3ec72c20855fe9ff040f7ba0a4 *extdata/rmd_report_skeleton.Rmd
d3041dfa7f1a919f62fd9f3d7bbc74dd *extdata/sc-atac-sample-feature-matrix.RDS
975986fcc8841f9ab69d8e9cebc77d9e *extdata/sc-atac-sample-sparse-matrix.RDS
4f72dbb833c45e8d9417b4bc3a0b4716 *extdata/simu_R1.fastq.gz
6b555e64cd9a0e3dbe416284e857fae2 *extdata/simu_R2.fastq.gz
e3cdce6fb66269708c470cc0fd510cea *extdata/small_chr21.fa
b5bc2f8fb8514487ae2c5d8668461613 *extdata/small_chr21.fa.fai
07c8225066e7fd0deb5079031de63f77 *extdata/small_chr21_R1.fastq.gz
e68224782a73698a172c5c4e2e0b1eee *extdata/small_chr21_R2.fastq.gz
df2aa5c5d8348f56ac679203d8740846 *extdata/small_chr21_R3.fastq.gz
70bbfd382f07dbe60b793d2ac0991c1e *extdata/smallbarcode1col.csv
f30536d796487f3e3e43284df008ddc7 *help/AnIndex
d3af300b62f941a73a6f6b9d90627920 *help/aliases.rds
b51a693236b57fee7331ba4740a0c2ff *help/paths.rds
c15dec498680188614c433cd11a4d4f7 *help/scPipe.rdb
4b4d89f6dd6dd78d358390a7ae0e8b04 *help/scPipe.rdx
edec6244a2f5c4b28a3ce30a4d52542b *html/00Index.html
8b9362669af13540a86a3ac6cf22f99d *html/R.css
f3a95c97437c39a6d01ea67d31dbaaf1 *libs/x64/scPipe.dll
e5fb99679bfab62ef806afba63d0c4a3 *report_example.png
98b69e4793fedac6484ec350c67ff704 *scATAC-seq_workflow.png
e17bcd270318aaaabf8568c328e3d59c *scPipe.png
a4e7b825ee1d624e008b5bcb4659e78d *workflow.png
539036b9e7ef7b36171b51a4f8e69e75 *workflow_combined.png
