Package: netOmics
Title: Multi-Omics (time-course) network-based integration and
        interpretation
Version: 1.6.0
Authors@R: 
    person(given = "Antoine", family = "Bodein", role = c("aut", "cre"), email = "antoine.bodein.1@ulaval.ca")
Description: netOmics is a multi-omics networks builder and explorer.
    It uses a combination of network inference algorithms and and knowledge-based graphs to build multi-layered networks.
    The package can be combined with timeOmics to incorporate time-course expression data and build sub-networks from multi-omics kinetic clusters.
    Finally, from the generated multi-omics networks, propagation analyses allow the identification of missing biological functions (1), 
    multi-omics mechanisms (2) and molecules between kinetic clusters (3). This helps to resolve complex regulatory mechanisms.
License: GPL-3
Encoding: UTF-8
LazyData: false
Roxygen: list(markdown = TRUE)
RoxygenNote: 7.2.3
VignetteBuilder: knitr
Depends: R (>= 4.1)
Imports: dplyr, ggplot2, igraph, magrittr, minet, purrr, tibble, tidyr,
        AnnotationDbi, GO.db, RandomWalkRestartMH, gprofiler2, methods,
        stats
Suggests: mixOmics, timeOmics, tidyverse, BiocStyle, testthat, covr,
        rmarkdown, knitr
biocViews: GraphAndNetwork, Software, TimeCourse, WorkflowStep,
        SystemsBiology, NetworkInference, Network
URL: https://github.com/abodein/netOmics
BugReports: https://github.com/abodein/netOmics/issues
git_url: https://git.bioconductor.org/packages/netOmics
git_branch: RELEASE_3_17
git_last_commit: 7adf7b1
git_last_commit_date: 2023-04-25
Date/Publication: 2023-04-26
NeedsCompilation: no
Packaged: 2023-04-27 00:27:27 UTC; biocbuild
Author: Antoine Bodein [aut, cre]
Maintainer: Antoine Bodein <antoine.bodein.1@ulaval.ca>
Built: R 4.3.0; ; 2023-04-27 12:40:31 UTC; windows
