# Generated by roxygen2: do not edit by hand

export(checkCuts)
export(diffMeth)
export(plotCircos)
export(plotCounts)
export(rawCounts)
import(GenomeInfoDb)
import(GenomicAlignments)
import(GenomicFeatures)
import(GenomicRanges)
import(Rsamtools)
import(SummarizedExperiment)
import(edgeR)
import(ggplot2)
import(parallel)
import(plyr)
import(methods)
importFrom(BSgenome,getBSgenome)
importFrom(GenomicRanges,makeGRangesFromDataFrame)
importFrom(IRanges,IRanges)
importFrom(R.utils,gunzip)
importFrom(R.utils,gzip)
importFrom(S4Vectors,Rle)
importFrom(easyRNASeq,BamFileList)
importFrom(easyRNASeq,validate)
importFrom(ggbio,autoplot)
importFrom(ggbio,circle)
importFrom(ggbio,ggbio)
importFrom(stats,model.matrix)
importFrom(stats,relevel)
