Package: miaSim
Type: Package
Version: 1.6.0
Authors@R: 
     c(person(given = "Yagmur", family = "Simsek", role = c("cre", "aut"),
              email = "yagmur.simsek.98@gmail.com"),
       person(given = "Karoline", family = "Faust", role = c("aut"),
              email = "karoline.faust@kuleuven.be"),
       person(given = "Yu", family = "Gao", role = c("aut"),
              email = "gaoyu19920914@gmail.com"),
       person(given = "Emma", family = "Gheysen", role = c("aut"),
              email = "emma.gheysen@student.kuleuven.be"),
       person(given = "Daniel Rios", family = "Garza", role = c("aut"),
              email = "danielrios.garza@kuleuven.be"),
      person(given = "Tuomas", family = "Borman", role = c("aut"),
             email = "tuomas.v.borman@utu.fi",
             comment = c(ORCID = "0000-0002-8563-8884")),
       person(given = "Leo", family = "Lahti", role = c("aut"),
              email = "leo.lahti@iki.fi",
              comment = c(ORCID = "0000-0001-5537-637X"))
	      )
Title: Microbiome Data Simulation
Description: 
    Microbiome time series simulation with generalized Lotka-Volterra model,
    Self-Organized Instability (SOI), and other models. Hubbell's Neutral model
    is used to determine the abundance matrix. The resulting abundance matrix
    is applied to (Tree)SummarizedExperiment objects.
License: Artistic-2.0 | file LICENSE
biocViews: Microbiome, Software, Sequencing, DNASeq, ATACSeq, Coverage,
        Network
Encoding: UTF-8
RoxygenNote: 7.2.3
Depends: TreeSummarizedExperiment
Imports: SummarizedExperiment, deSolve, stats, poweRlaw,
        MatrixGenerics, S4Vectors
Suggests: ape, cluster, dplyr, GGally, ggplot2, igraph, network,
        reshape2, sna, vegan, rmarkdown, knitr, BiocStyle, testthat,
        mia, miaViz, colourvalues, philentropy
URL: https://github.com/microbiome/miaSim
BugReports: https://github.com/microbiome/miaSim/issues
Roxygen: list(markdown = TRUE)
VignetteBuilder: knitr
git_url: https://git.bioconductor.org/packages/miaSim
git_branch: RELEASE_3_17
git_last_commit: 8684da7
git_last_commit_date: 2023-04-25
Date/Publication: 2023-04-25
NeedsCompilation: no
Packaged: 2023-04-26 03:19:32 UTC; biocbuild
Author: Yagmur Simsek [cre, aut],
  Karoline Faust [aut],
  Yu Gao [aut],
  Emma Gheysen [aut],
  Daniel Rios Garza [aut],
  Tuomas Borman [aut] (<https://orcid.org/0000-0002-8563-8884>),
  Leo Lahti [aut] (<https://orcid.org/0000-0001-5537-637X>)
Maintainer: Yagmur Simsek <yagmur.simsek.98@gmail.com>
Built: R 4.3.0; ; 2023-04-26 15:56:33 UTC; windows
