# Generated by roxygen2: do not edit by hand

export("ROIPoly<-")
export("annotGeometries<-")
export("annotGeometry<-")
export("annotGeometryNames<-")
export("annotGraph<-")
export("annotGraphNames<-")
export("annotGraphs<-")
export("cellSeg<-")
export("centroids<-")
export("colData<-")
export("colGeometries<-")
export("colGeometry<-")
export("colGeometryNames<-")
export("colGraph<-")
export("colGraphNames<-")
export("colGraphs<-")
export("dimGeometries<-")
export("dimGeometry<-")
export("dimGeometryNames<-")
export("localResult<-")
export("localResultNames<-")
export("localResults<-")
export("nucSeg<-")
export("rowGeometries<-")
export("rowGeometry<-")
export("rowGeometryNames<-")
export("rowGraph<-")
export("rowGraphNames<-")
export("rowGraphs<-")
export("spatialCoords<-")
export("spatialGraph<-")
export("spatialGraphNames<-")
export("spatialGraphs<-")
export("spotPoly<-")
export("tissueBoundary<-")
export("txSpots<-")
export(.check_features)
export(.check_sample_id)
export(.rm_empty_geometries)
export(.symbol2id)
export(.value2df)
export(.warn_symbol_duplicate)
export(ROIPoly)
export(SFEVersion)
export(SpatialFeatureExperiment)
export(addVisiumSpotPoly)
export(annotGeometries)
export(annotGeometry)
export(annotGeometryNames)
export(annotGraph)
export(annotGraphNames)
export(annotGraphs)
export(annotNPred)
export(annotOp)
export(annotPred)
export(annotSummary)
export(bbox)
export(cellSeg)
export(centroids)
export(changeSampleIDs)
export(colData)
export(colGeometries)
export(colGeometry)
export(colGeometryNames)
export(colGraph)
export(colGraphNames)
export(colGraphs)
export(crop)
export(df2sf)
export(dimGeometries)
export(dimGeometry)
export(dimGeometryNames)
export(findSpatialNeighbors)
export(findVisiumGraph)
export(getImg)
export(imgData)
export(localResult)
export(localResultAttrs)
export(localResultFeatures)
export(localResultNames)
export(localResults)
export(mirror)
export(nucSeg)
export(read10xVisiumSFE)
export(readVizgen)
export(removeEmptySpace)
export(rowData)
export(rowGeometries)
export(rowGeometry)
export(rowGeometryNames)
export(rowGraph)
export(rowGraphNames)
export(rowGraphs)
export(sampleIDs)
export(spatialCoords)
export(spatialCoordsNames)
export(spatialGraph)
export(spatialGraphNames)
export(spatialGraphs)
export(spotPoly)
export(st_any_intersects)
export(st_any_pred)
export(st_n_intersects)
export(st_n_pred)
export(tissueBoundary)
export(toSpatialFeatureExperiment)
export(transpose)
export(transposeImg)
export(txSpots)
export(unit)
exportClasses(SpatRasterImage)
exportClasses(SpatialFeatureExperiment)
exportMethods("[")
exportMethods("annotGeometries<-")
exportMethods("annotGeometry<-")
exportMethods("annotGeometryNames<-")
exportMethods("annotGraphs<-")
exportMethods("colGraphs<-")
exportMethods("dimGeometries<-")
exportMethods("dimGeometry<-")
exportMethods("dimGeometryNames<-")
exportMethods("localResult<-")
exportMethods("localResultNames<-")
exportMethods("localResults<-")
exportMethods("rowGraphs<-")
exportMethods("spatialGraph<-")
exportMethods("spatialGraphNames<-")
exportMethods("spatialGraphs<-")
exportMethods(addImg)
exportMethods(annotGeometries)
exportMethods(annotGeometry)
exportMethods(annotGeometryNames)
exportMethods(annotGraphs)
exportMethods(bbox)
exportMethods(cbind)
exportMethods(colGraphs)
exportMethods(dimGeometries)
exportMethods(dimGeometry)
exportMethods(dimGeometryNames)
exportMethods(findSpatialNeighbors)
exportMethods(imgRaster)
exportMethods(imgSource)
exportMethods(localResult)
exportMethods(localResultAttrs)
exportMethods(localResultFeatures)
exportMethods(localResultNames)
exportMethods(localResults)
exportMethods(mirrorImg)
exportMethods(rowGraphs)
exportMethods(show)
exportMethods(spatialGraph)
exportMethods(spatialGraphNames)
exportMethods(spatialGraphs)
exportMethods(toSpatialFeatureExperiment)
exportMethods(transposeImg)
exportMethods(unit)
exportMethods(updateObject)
importClassesFrom(SpatialExperiment,SpatialExperiment)
importClassesFrom(SpatialExperiment,VirtualSpatialImage)
importClassesFrom(terra,SpatRaster)
importFrom(BiocGenerics,cbind)
importFrom(BiocGenerics,updateObject)
importFrom(BiocNeighbors,AnnoyParam)
importFrom(BiocNeighbors,KmknnParam)
importFrom(BiocNeighbors,findKNN)
importFrom(BiocNeighbors,findNeighbors)
importFrom(BiocParallel,SerialParam)
importFrom(BiocParallel,bplapply)
importFrom(BiocParallel,bpmapply)
importFrom(Matrix,colSums)
importFrom(Matrix,rowSums)
importFrom(Matrix,sparseMatrix)
importFrom(S4Vectors,DataFrame)
importFrom(S4Vectors,SimpleList)
importFrom(S4Vectors,make_zero_col_DFrame)
importFrom(S4Vectors,setValidity2)
importFrom(SingleCellExperiment,"int_colData<-")
importFrom(SingleCellExperiment,"int_elementMetadata<-")
importFrom(SingleCellExperiment,"int_metadata<-")
importFrom(SingleCellExperiment,int_colData)
importFrom(SingleCellExperiment,int_elementMetadata)
importFrom(SingleCellExperiment,int_metadata)
importFrom(SpatialExperiment,"imgData<-")
importFrom(SpatialExperiment,"spatialCoords<-")
importFrom(SpatialExperiment,SpatialExperiment)
importFrom(SpatialExperiment,addImg)
importFrom(SpatialExperiment,getImg)
importFrom(SpatialExperiment,imgData)
importFrom(SpatialExperiment,imgRaster)
importFrom(SpatialExperiment,imgSource)
importFrom(SpatialExperiment,mirrorImg)
importFrom(SpatialExperiment,read10xVisium)
importFrom(SpatialExperiment,spatialCoords)
importFrom(SpatialExperiment,spatialCoordsNames)
importFrom(SpatialExperiment,toSpatialExperiment)
importFrom(SummarizedExperiment,"colData<-")
importFrom(SummarizedExperiment,"rowData<-")
importFrom(SummarizedExperiment,colData)
importFrom(SummarizedExperiment,rowData)
importFrom(grDevices,col2rgb)
importFrom(methods,as)
importFrom(methods,callNextMethod)
importFrom(methods,is)
importFrom(methods,new)
importFrom(methods,setAs)
importFrom(methods,setClass)
importFrom(methods,setGeneric)
importFrom(methods,setMethod)
importFrom(methods,setReplaceMethod)
importFrom(methods,show)
importFrom(methods,validObject)
importFrom(rjson,fromJSON)
importFrom(rlang,check_installed)
importFrom(sf,"st_agr<-")
importFrom(sf,"st_geometry<-")
importFrom(sf,st_agr)
importFrom(sf,st_area)
importFrom(sf,st_as_sfc)
importFrom(sf,st_bbox)
importFrom(sf,st_buffer)
importFrom(sf,st_cast)
importFrom(sf,st_centroid)
importFrom(sf,st_coordinates)
importFrom(sf,st_disjoint)
importFrom(sf,st_distance)
importFrom(sf,st_drop_geometry)
importFrom(sf,st_geometry)
importFrom(sf,st_geometry_type)
importFrom(sf,st_geometrycollection)
importFrom(sf,st_intersection)
importFrom(sf,st_intersects)
importFrom(sf,st_is_empty)
importFrom(sf,st_is_valid)
importFrom(sf,st_join)
importFrom(sf,st_linestring)
importFrom(sf,st_multilinestring)
importFrom(sf,st_multipoint)
importFrom(sf,st_multipolygon)
importFrom(sf,st_nearest_feature)
importFrom(sf,st_point)
importFrom(sf,st_polygon)
importFrom(sf,st_sf)
importFrom(sf,st_sfc)
importFrom(sf,st_union)
importFrom(spdep,card)
importFrom(spdep,dnearneigh)
importFrom(spdep,gabrielneigh)
importFrom(spdep,graph2nb)
importFrom(spdep,knearneigh)
importFrom(spdep,knn2nb)
importFrom(spdep,nb2listw)
importFrom(spdep,nb2listwdist)
importFrom(spdep,poly2nb)
importFrom(spdep,relativeneigh)
importFrom(spdep,soi.graph)
importFrom(spdep,tri2nb)
importFrom(stats,aggregate)
importFrom(stats,setNames)
importFrom(terra,"ext<-")
importFrom(terra,ext)
importFrom(terra,rast)
importFrom(terra,vect)
importFrom(utils,getFromNamespace)
importFrom(utils,packageVersion)
importFrom(utils,read.csv)
