SFE-image               Images in SpatialFeatureExperiment object
SFE-transform           Transpose or mirror SFE object in histological
                        space
SpatialFeatureExperiment
                        Constructor of SpatialFeatureExperiment object
SpatialFeatureExperiment-class
                        The SpatialFeatureExperiment class
SpatialFeatureExperiment-coercion
                        SpatialFeatureExperiment coercion methods
SpatialFeatureExperiment-subset
                        Subsetting SpatialFeatureExperiment objects
addVisiumSpotPoly       Add Visium spot polygons to colGeometry
annotGeometries         Annotation geometry methods
annotOp                 Binary operations for geometry of each
                        cell/spot and annotation
annotPred               Binary predicates for geometry of each
                        cell/spot and annotation
annotSummary            Summarize attributes of an annotGeometry for
                        each cell/spot
bbox,SpatialFeatureExperiment-method
                        Find bounding box of SFE objects
cbind,SpatialFeatureExperiment-method
                        Concatenate SpatialFeatureExperiment objects
changeSampleIDs         Change sample IDs
crop                    Crop an SFE object with a geometry
df2sf                   From ordinary data frame to sf to construct SFE
                        object
dimGeometries           Dimension geometry methods
findSpatialNeighbors,SpatialFeatureExperiment-method
                        Find spatial neighborhood graph
findVisiumGraph         Find spatial neighborhood graphs for Visium
                        spots
localResults            Organize results from local spatial statistics
read10xVisiumSFE        Read 10X Visium data as
                        SpatialFeatureExperiment
readVizgen              Read Vizgen MERFISH output as
                        SpatialFeatureExperiment
removeEmptySpace        Remove empty space
sampleIDs               Get all unique sample IDs
show,SpatialFeatureExperiment-method
                        Print method for SpatialFeatureExperiment
spatialGraphs           Spatial graph methods
st_any_pred             Simple geometry predicates
unit,SpatialFeatureExperiment-method
                        Get unit of a SpatialFeatureExperiment
updateObject            Update a SpatialFeatureExperiment object
visium_row_col          Row and columns of Visium barcodes on the slide
