# Spatial Transcriptomics Analysis

## Documentation for package ‘Spaniel’ version 1.14.0

- DESCRIPTION file.
- User guides, package vignettes and other documentation.
- Package NEWS.

## Help Pages

addCoordinates | Add coordinates to Object Adds output of Spot Detector coordinates to Seurat object or SCE object created by createSeurat/createSCE. Details about how to use Spot Detector can be found: https://github.com/SpatialTranscriptomicsResearch/st_spot_detector
createSCE | Create a SingleCellExperiment Object From Spatial Transcriptomics Data
createSeurat | Create a Seurat Object From Spatial Transcriptomics Data
createVisiumSCE | createVisiumSCE
markClusterCol | markClusterCol
parseImage | This function parses a HE image to use as the background for plots
removeSpots | removeSpots
runShinySpaniel | RunShinySpaniel
selectSpots | selectSpots
spanielPlot | Spatial Transcriptomics Plot