1d8b8aacc5a6af11836353a1a71e0103 *DESCRIPTION
31d66478450e619de4969304f8c0cf3c *INDEX
4cf7e05392e5b118d9295b6e42973cae *Meta/Rd.rds
dff0c21365af97a4870480e08afc2958 *Meta/features.rds
d6d8fa1c581c6ca1525fb3f2d8d63502 *Meta/hsearch.rds
f1d348b93db58dcdaeafa52968a42088 *Meta/links.rds
06ac2714b7bf866aba07a609af2ebc61 *Meta/nsInfo.rds
00aed0938a879c7c9810513434084c0c *Meta/package.rds
ea20261cdce2bd468a95981eb86f6572 *Meta/vignette.rds
39785d75c0fd5a919b21824142838c56 *NAMESPACE
372a26f5d2b6c48db667c671f94bb738 *NEWS
d6c68f1fe41ced6e98a766a3757313da *R/Rhtslib
c85556f0f82ea4374804a93af77b0f7d *R/Rhtslib.rdb
5c60996a80fa76f992b45ad88df0dd07 *R/Rhtslib.rdx
f3ee14a2b69b8e8399fd7961e016b20b *doc/Rhtslib.R
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c54d4a4428732413a4ad28025708fa0a *doc/index.html
08ab35ecf014a5d0cd459d5285ac3020 *help/AnIndex
e1d4e721bd28f91790c467dfbd292e1a *help/Rhtslib.rdb
54b423089eee924e1d80a88928ac8c2d *help/Rhtslib.rdx
98b00d2e978c33396e9859a603ea1913 *help/aliases.rds
466faafec7850efa3d8a0b60191361d5 *help/paths.rds
1acd4f2ee76166d16eeaadc5a85b5b3b *html/00Index.html
8b9362669af13540a86a3ac6cf22f99d *html/R.css
0c1bb5c17bee18f7c062a2c7d32231e0 *include/README
2408957a062d57805c5dfc2246953d09 *include/bam_cat.c
138b81de73af351558b0b4332e783226 *include/bam_plbuf.c
ad30211f55bc1a4b4186f33144434589 *include/bam_plbuf.h
cf097bf93f44fa01ced30a46302488bd *include/bam_sort.c
f5d7ac2260f81618da57c298044bdfe3 *include/bedidx.c
f981ce9d176c046d3b2e0f1ad8f3e57d *include/bedidx.h
701d3b34a3b54437f6f0f9bad73cb6b8 *include/htslib/bgzf.h
9269005b8c53028ca5faecd77a955231 *include/htslib/cram.h
71a218787e5ae0a7adfba0d026aa93fd *include/htslib/faidx.h
cd38333fa9b4b0ef33abb2b4356fde8f *include/htslib/hfile.h
c7dc5fc4e5bdd2ee7327ad42a751eb92 *include/htslib/hts.h
b449a7892fe1b88729e6ae1d4d7bc993 *include/htslib/hts_defs.h
076a0d412ebd082282e22b1abc27d088 *include/htslib/hts_endian.h
a80de128b94c7ea6688870e874f836e6 *include/htslib/hts_expr.h
c74398e06324514c8cd966a158ec1741 *include/htslib/hts_log.h
3d406f82e08b95aa9a210b336f87cb7f *include/htslib/hts_os.h
cf84c8ac0d1197a3bf11293ca2d19875 *include/htslib/kbitset.h
905afa0bbfc0cae217b909aef543fa93 *include/htslib/kfunc.h
65a22945a6b0dd8c7e4297e6fc0b7826 *include/htslib/khash.h
163c505b6a47b236c04f9455ee4c493c *include/htslib/khash_str2int.h
5b880009152fb7062f2680d401ac7424 *include/htslib/klist.h
12ec1628f346058d42bb704b10d3a884 *include/htslib/knetfile.h
06b42704ca4b4b17f448ef9d364b8783 *include/htslib/kroundup.h
156f868eae68fb1bc37d34c3c20c16a5 *include/htslib/kseq.h
9f7b758259a19a6be0ac9de80e1d62dc *include/htslib/ksort.h
fc5895b80aff918f033854d44f43fc0e *include/htslib/kstring.h
a8d476786a1351aec6445026da0d1ac2 *include/htslib/regidx.h
4abd0ad54c46cf7e20fe6c233fc40754 *include/htslib/sam.h
097b3f9fe44c5b7117419dcfd2bd2058 *include/htslib/synced_bcf_reader.h
9232c21378cbcfd038ae6f71ad02fb7b *include/htslib/tbx.h
bbb7040a24c840896ca155533fbc1a30 *include/htslib/thread_pool.h
7f1358e7e094ec5ebb6d872eff16d3b3 *include/htslib/vcf.h
70eb4c499026fce028f561e6626fff0a *include/htslib/vcf_sweep.h
8c149b90a7de95f0f7fbca92ca9ec218 *include/htslib/vcfutils.h
f5c8356d39d63d07b27552fe9f3c5b6b *include/sam_opts.c
2b38086da37a54b3b8875492f0298c0e *include/sam_opts.h
0423db9685a7fb0c8f9e1bbaff38394d *include/sam_utils.c
cd2cce6f00001cbd4c13d0050a7065bf *include/samtools-1.7-compat.h
dbdfc94eaa104b0bc3467d5fe11f7945 *include/samtools.h
cbead1633ea12923f75ae79406b9c5d2 *libs/x64/Rhtslib.dll
aef5fa3c8222ebebd854034b76236538 *testdata/auxf#values.sam
fb2de660e7d5e5238875d628a2aae567 *testdata/auxf#values_java.cram
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7e8fa919cf80797a912221fdeb52f72e *testdata/auxf.fa.fai
1cf3c08841184582e8db4ed483958af3 *testdata/c1#bounds.sam
85fe4fd282e64adb93b5b7789f2632f0 *testdata/c1#clip.sam
1196b53427f8cb7e57028c9a9c316894 *testdata/c1#noseq.sam
71bb8e8c5cb4f86d7dccb4206506ecc0 *testdata/c1#pad1.sam
aba0bb2d0079499b50961c8f0f7c520e *testdata/c1#pad2.sam
ac9b9cf18079d07d61eb6db66384f011 *testdata/c1#pad3.sam
1628e92d4a04185b8dadada2221482e8 *testdata/c1#unknown.sam
d80442fcdb8a146476c4a69c5033befe *testdata/c1.fa
2f537adf9e10a6f3e6445f7f8284bed2 *testdata/c1.fa.fai
225f59dc95977cbc1ecd3adbaa761f00 *testdata/c2#pad.sam
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bacddce6bec3f7da347359cfa7357d72 *testdata/c2.fa.fai
8ed4fdbc2be420fe69537e878b7a9d59 *testdata/ce#1.sam
a2f5549865a33f721aecf835eb4a4dc4 *testdata/ce#1000.sam
877069c3b73a6eba83e7746198c07d85 *testdata/ce#2.sam
ebb33192f142425194f4520b99a28113 *testdata/ce#5.sam
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a5e7634db2df4aa2925ad9dbdf4dffe0 *testdata/ce#5b_java.cram
7e76d143ad5d0369d81fd2310c394fe7 *testdata/ce#large_seq.sam
a13c2849298e4180bbda657992b647a6 *testdata/ce#supp.sam
84ea6309b8666e83048c9d60e6109f9c *testdata/ce#tag_depadded.sam
d2822558628321aa187fb8eb4acb6fff *testdata/ce#tag_padded.sam
4196c29b1daebf2f072925a32ca930d9 *testdata/ce#unmap.sam
16046e6ba531c379d3d26e0b212b39a3 *testdata/ce#unmap1.sam
966ef7223e7649a99efc5c6029a878ff *testdata/ce#unmap2.sam
cfdd101d3d08fc60f60f2aa63a7055d4 *testdata/ce.fa
caf7cc4f77dcf116369d0b48ff83d5b4 *testdata/ce.fa.fai
9e3faa6aef3fe7c225ef5996cf567c1a *testdata/colons.bam
8ee3ae2d6a22ef3d122d9c01e47f08b7 *testdata/faidx.fa
6685e3a1e6410ca0b421d3c8a56e95b7 *testdata/fieldarith.sam
44dd57afa380887421f862624b0a7c23 *testdata/formatcols.vcf
d5f0f97cc4926cc1df7553dbabe19723 *testdata/formatmissing-out.vcf
d5f0f97cc4926cc1df7553dbabe19723 *testdata/formatmissing.vcf
850cbc11858ea73c2f7d85777bf1807b *testdata/index.sam
0e408b5fdce43c92a43603099f58c8b7 *testdata/index.vcf
f082affb224ff5110ecf52b86fd177eb *testdata/index2.sam
850cbc11858ea73c2f7d85777bf1807b *testdata/index_dos.sam
9621fcaa95ed603b13ef585dd869d57b *testdata/md#1.sam
25e3af5db6506317564059876ee08fc0 *testdata/md.fa
b14c43520985e77e0898f1c9ecd0637c *testdata/md.fa.fai
875889b957af6d82dddc32488f319192 *testdata/no_hdr_sq_1.bam
79f024f93052b404912a2fb6e801032a *testdata/no_hdr_sq_1.expected.sam
8a8a4c82dfe06e48d0ae7407332a5f39 *testdata/noroundtrip-out.vcf
fc5c8cff45f39fc42681d0e502e3c86c *testdata/noroundtrip.vcf
1c23eaabeb31d8cbafe19d6e5b3a5999 *testdata/range.bam
f3802d15f9b780fef5427c356353bd85 *testdata/range.cram
745c9d977ff8b0962a4d2db9934e233b *testdata/realn01.fa
fa751c736ab697698a577ec1fcdecf2f *testdata/realn01.fa.fai
d39d1b211437a547ab29100f21659af9 *testdata/realn01.sam
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9a92badfe49d198bc8f9b8b0fa32ca99 *testdata/realn01_exp-e.sam
9a92badfe49d198bc8f9b8b0fa32ca99 *testdata/realn01_exp.sam
2f4fdcb4ae88352dcba27b1c08bd9a8c *testdata/realn02-r.sam
775792a1fdf307b406598a61cf4d9610 *testdata/realn02.fa
e5db0b04f87cccd586e94733f6ec24b4 *testdata/realn02.fa.fai
622728558d4d94fde284d401cb44e4d6 *testdata/realn02.sam
4bd7e39a7584234ebb142e44df92e0f0 *testdata/realn02_exp-a.sam
286a79b00726ce8ce5d558ea4f22c150 *testdata/realn02_exp-e.sam
bbafb340c76a1cd651344494b9df0b99 *testdata/realn02_exp.sam
91e7e591625b466e22d59cd479e83a69 *testdata/tabix/bed_file.bed
a3ca4493f951df2467fed1d68b931beb *testdata/tabix/gff_file.gff
75c420357c4d787e7972bc7a8882cc6e *testdata/tabix/large_chr.vcf
1b0258f2a950d896854b933ac4f5183b *testdata/tabix/vcf_file.bcf
bd2a9fdc831b688aa9ed92c1d85bc9e6 *testdata/tabix/vcf_file.vcf
e30fafaf3430f91d0a6df845f6ee8ac0 *testdata/test-vcf-hdr-in.vcf
a4c1907f5ad5be3f63b0c9aaad810b43 *testdata/vcf_meta_meta.vcf
9bdb8a927048138ebff3e6cc453c2014 *testdata/xx#MD.sam
730692f9db3b7cef0d705f6b0e303c4c *testdata/xx#MD2.sam
a95108fcd08a9366e15246ac80c9289a *testdata/xx#blank.sam
4707816d39fb24851b4a55b4da1bb7a2 *testdata/xx#large_aux.sam
6915beff0fd50f3e3e3615ef0fa111fa *testdata/xx#large_aux2.sam
687f33311fa7ab69e03632a172139ad0 *testdata/xx#large_aux_java.cram
e7cfb90690ba8b0b3123b5750fca4810 *testdata/xx#minimal.sam
2349b1bbbb2e5af5e81a786e3a1c72b1 *testdata/xx#pair.sam
3fb60cb838a2f0b4c91fbdc7095247a8 *testdata/xx#repeated.sam
2d298fb75099fbf0c1eda326536df856 *testdata/xx#rg.sam
10a75a063b03e018b1e0093e448dfacd *testdata/xx#tlen.sam
3b15464da6d57edf3a03211f42b190dd *testdata/xx#tlen2.sam
ca2c1dbbc1f49e7e77310ed1769d2a43 *testdata/xx#triplet.sam
e89624b6e9e818d60134c747418eb5ce *testdata/xx#unsorted.sam
fa89a7556f0a9d332564f7bd5bb5d874 *testdata/xx.fa
39cb4f1855c06993a9628b114c449e0f *testdata/xx.fa.fai
2173fef4030d5f57df4c09012e7b7a3d *usrlib/x64/libhts.a
