RLRanges-class          Construct RLRanges Dataset
RLRangesFromRLBase      Access RLBase samples as RLRanges
RLSeq                   RLSeq
analyzeRLFS             Analyze RLFS
auxdata                 Auxiliary Data
available_genomes       Available Genomes
checkRLFSAnno           Check RLFS
corrAnalyze             Analyze Correlations
corrHeatmap             Plot Correlation Results
featureEnrich           Test Genomic Feature Enrichment
feature_ggplot          Feature ggplot
geneAnnotation          Annotate R-Loops with Genes
genomeMasks             Genome Masks
getChromSizes           Get Chrom Sizes
getGSSignal             Get GS Signal
getRLFSAnno             Get RLFS
noiseAnalyze            Analyze sample noise
noiseComparisonPlot     Creates a metaplot for comparing noise analysis
                        results with RLBase
peak_stats              Build peak statistics tibble
plotEnrichment          Plot Enrichment Test Results
plotFingerprint         Plot noise analysis results as a fingerprint
                        plot
plotRLFSRes             Plot RLFS analysis results
plotRLRegionOverlap     Plot RL-Region overlap with RLRanges
plotTxFeatureOverlap    Plot Transcript Feature Overlap
predictCondition        Predict Condition
randomWindows           Random Genomic Windows
report                  RLSeq Report
rlRegionTest            R-Loop region test
rlbaseNoiseAnalyze      RLBase Sample Noise Analysis Results
rlresult                RLSeq Results
rlsampleTxOl            RLBase Sample Transcript Feature Overlaps
tableToRegions          Table to Regions
txFeatureOverlap        Calculate overlap with transcript features
urlExists               Check if URL exists
