GCSscore                Main GCS-score Function
calcSF                  calculates Scaling Factor (SF) values
computeSscore           Computes GCS-score values
get3primeIVTprobefileData
                        Read a data file describing the probe sequences
                        on an Affymetrix genechip
getClariomSprobefileData
                        Read a data file describing the probe sequences
                        on an Affymetrix genechip
getXTAprobefileData     Read a data file describing the probe sequences
                        on an Affymetrix genechip
mismatch                Calculates mismatch values for probes
normalize               Normalization of GCS-score values
rawScore                Calculates the rawScore values
zoneRQ                  Calculates the zone-based RawQ values
