# interface to python sklearn via Rstudio reticulate

## Documentation for package ‘BiocSklearn’ version 1.22.0

- DESCRIPTION file.
- User guides, package vignettes and other documentation.

## Help Pages

getTransformed | container for sklearn objects and transforms
getTransformed-method | container for sklearn objects and transforms
h5mat | create a file connection to HDF5 matrix
H5matref | obtain an HDF5 dataset reference suitable for handling as numpy matrix
SkDecomp | constructor for SkDecomp
SkDecomp-class | container for sklearn objects and transforms
skIncrPartialPCA | use basilisk discipline to perform partial (n_components) incremental (chunk.size) PCA with scikit.decomposition
skIncrPCA | use sklearn IncrementalPCA procedure
skIncrPCA_h5 | demo of HDF5 processing with incremental PCA/batch_size/fit_transform
skIncrPPCA | optionally fault tolerant incremental partial PCA for projection of samples from SummarizedExperiment
skIncrPPCA-method | optionally fault tolerant incremental partial PCA for projection of samples from SummarizedExperiment
skKMeans | interface to sklearn.cluster.KMeans using basilisk discipline
skPartialPCA_step | take a step in sklearn IncrementalPCA partial fit procedure
skPCA | use sklearn PCA procedure
skPWD | use sklearn pairwise_distances procedure