Package: DropletUtils
Version: 1.20.0
Date: 2022-11-21
Title: Utilities for Handling Single-Cell Droplet Data
Authors@R: c(
    person("Aaron", "Lun", role = "aut"),
    person("Jonathan", "Griffiths", role=c("ctb", "cre"), email = "jonathan.griffiths.94@gmail.com"),
    person("Davis", "McCarthy", role="ctb"),
    person("Dongze", "He", role="ctb"),
    person("Rob", "Patro", role="ctb"))
Depends: SingleCellExperiment
Imports: utils, stats, methods, Matrix, Rcpp, BiocGenerics, S4Vectors,
        IRanges, GenomicRanges, SummarizedExperiment, BiocParallel,
        DelayedArray, DelayedMatrixStats, HDF5Array, rhdf5, edgeR,
        R.utils, dqrng, beachmat, scuttle
Suggests: testthat, knitr, BiocStyle, rmarkdown, jsonlite,
        DropletTestFiles
biocViews: ImmunoOncology, SingleCell, Sequencing, RNASeq,
        GeneExpression, Transcriptomics, DataImport, Coverage
Description: 
    Provides a number of utility functions for handling single-cell 
    (RNA-seq) data from droplet technologies such as 10X Genomics. This 
    includes data loading from count matrices or molecule information files, 
    identification of cells from empty droplets, removal of barcode-swapped 
    pseudo-cells, and downsampling of the count matrix.
License: GPL-3
NeedsCompilation: yes
VignetteBuilder: knitr
LinkingTo: Rcpp, beachmat, Rhdf5lib, BH, dqrng, scuttle
SystemRequirements: C++11, GNU make
RoxygenNote: 7.2.3
git_url: https://git.bioconductor.org/packages/DropletUtils
git_branch: RELEASE_3_17
git_last_commit: 855762f
git_last_commit_date: 2023-04-25
Date/Publication: 2023-05-08
Packaged: 2023-05-09 05:01:58 UTC; biocbuild
Author: Aaron Lun [aut],
  Jonathan Griffiths [ctb, cre],
  Davis McCarthy [ctb],
  Dongze He [ctb],
  Rob Patro [ctb]
Maintainer: Jonathan Griffiths <jonathan.griffiths.94@gmail.com>
Built: R 4.3.0; aarch64-apple-darwin20; 2023-05-12 09:52:03 UTC; unix
