# Get inversion status in predefined regions

## Documentation for package ‘scoreInvHap’ version 1.20.0

- DESCRIPTION file.
- User guides, package vignettes and other documentation.

## Help Pages

adaptRefs | Adapt references to imputed data
certainty | scoreInvHapRes instances
certainty-method | scoreInvHapRes instances
checkSNPs | Check genotype object
classification | scoreInvHapRes instances
classification-method | scoreInvHapRes instances
classifSNPs | Get similarity scores and probability
classifSNPsImpute | Get similarity scores and probability
computeScore | Compute all similarity scores for a sample
correctAlleleTable | Solve genotypes discrepancies
diffscores | scoreInvHapRes instances
diffscores-method | scoreInvHapRes instances
getAlleleTable | Compute the allele table
getGenotypesTable | Get genotypes table
getInvStatus | Get the inversion status of a sample
hetRefs | Heterozygote genotypes in the references
info | SNP reference description
inversionGR | Inversions' description
maxscores | scoreInvHapRes instances
maxscores-method | scoreInvHapRes instances
numSNPs | scoreInvHapRes instances
numSNPs-method | scoreInvHapRes instances
plotCallRate | scoreInvHapRes instances
plotCallRate-method | scoreInvHapRes instances
plotScores | scoreInvHapRes instances
plotScores-method | scoreInvHapRes instances
prepareMap | Modify feature data from VCF
propSNPs | scoreInvHapRes instances
propSNPs-method | scoreInvHapRes instances
Refs | Genotype frequency in references
scoreInvHap | scoreInvHap: package to get inversion status of predefined regions.
scoreInvHapRes | scoreInvHapRes instances
scoreInvHapRes-class | scoreInvHapRes instances
scoreInvHapRes-methods | scoreInvHapRes instances
scores | scoreInvHapRes instances
scores-method | scoreInvHapRes instances
SNPsR2 | R2 between the SNPs and the inversion status