Package: ontoProc
Title: processing of ontologies of anatomy, cell lines, and so on
Authors@R: c(person(given="Vincent", family="Carey", role=c("ctb", "cre"),
	   email = "stvjc@channing.harvard.edu",
           comment = c(ORCID = "0000-0003-4046-0063")),
	     person(given="Sara", family="Stankiewicz", role="ctb",
	     email = "reshs@channing.harvard.edu"))
Description: Support harvesting of diverse bioinformatic ontologies,
	making particular use of the ontologyIndex package on CRAN.
	We provide snapshots of key ontologies for terms about
	cells, cell lines, chemical compounds, and anatomy, to help
	analyze genome-scale experiments, particularly cell x compound 
        screens.  Another purpose is to strengthen development of 
	compelling use cases for richer interfaces to emerging ontologies.
Version: 1.20.0
Imports: Biobase, S4Vectors, methods, stats, utils, BiocFileCache,
        shiny, graph, Rgraphviz, ontologyPlot, dplyr, magrittr, DT,
        igraph, AnnotationHub, SummarizedExperiment
Suggests: knitr, org.Hs.eg.db, org.Mm.eg.db, testthat, BiocStyle,
        SingleCellExperiment, celldex, rmarkdown, AnnotationDbi
Depends: R (>= 4.0), ontologyIndex
License: Artistic-2.0
LazyLoad: yes
biocViews: Infrastructure, GO
RoxygenNote: 7.2.1
VignetteBuilder: knitr
Encoding: UTF-8
Collate: bind_formal_tags.R common_classes.R data.R getOntos.R
        seurTab.R CLextend.R connect_classes.R dropStop.R graphNEL.R
        shiny.R treeproc.R CLfeats.R countClasses.R fastGrep.R
        mapNaive.R subset_descendants.R clfixer.R ctmarks.R
        findCommonAncestors.R roots.R sym2CellOnto.R termProc.R
URL: https://github.com/vjcitn/ontoProc
BugReports: https://github.com/vjcitn/ontoProc/issues
git_url: https://git.bioconductor.org/packages/ontoProc
git_branch: RELEASE_3_16
git_last_commit: c0d8166
git_last_commit_date: 2022-11-01
Date/Publication: 2022-11-01
NeedsCompilation: no
Packaged: 2022-11-02 01:58:21 UTC; biocbuild
Author: Vincent Carey [ctb, cre] (<https://orcid.org/0000-0003-4046-0063>),
  Sara Stankiewicz [ctb]
Maintainer: Vincent Carey <stvjc@channing.harvard.edu>
Built: R 4.2.1; ; 2022-11-02 14:02:52 UTC; windows
