# Generated by roxygen2: do not edit by hand

export(alpaca)
export(alpacaCrane)
export(alpacaExtractTopGenes)
export(condorCluster)
export(condorCoreEnrich)
export(condorMatrixModularity)
export(condorModularityMax)
export(condorPlotCommunities)
export(condorPlotHeatmap)
export(condorQscore)
export(craneBipartite)
export(craneUnipartite)
export(createCondorObject)
export(createPandaStyle)
export(elistToAdjMat)
export(lioness)
export(lionessPy)
export(monster)
export(monsterBereFull)
export(monsterCalculateTmPValues)
export(monsterCheckDataType)
export(monsterGetTm)
export(monsterHclHeatmapPlot)
export(monsterMonsterNI)
export(monsterPlotMonsterAnalysis)
export(monsterPrintMonsterAnalysis)
export(monsterTransformationMatrix)
export(monsterTransitionNetworkPlot)
export(monsterTransitionPCAPlot)
export(monsterdTFIPlot)
export(otter)
export(pandaPy)
export(pandaToAlpaca)
export(pandaToCondorObject)
export(runEgret)
export(sambar)
export(sourcePPI)
export(visPandaInCytoscape)
import(AnnotationDbi, except= select)

import(GO.db)
import(GOstats, except= makeGOGraph)
import(GOstats, except= makeGOGraph) 
import(MASS)
import(Matrix)
import(RCy3)
import(STRINGdb)
import(data.table, except= c(dcast,melt))
import(doParallel)
import(foreach)
import(ggdendro)
import(ggplot2)
import(gplots)
import(grid)
import(igraph)
import(nnet)
import(org.Hs.eg.db)
import(parallel)
import(reticulate)
import(stats, except= c(cov2cor,decompose,toeplitz,lowess,update,spectrum))
import(vegan, except=diversity)
import(viridisLite)
import(yarn)
importFrom(Biobase,assayData)
importFrom(assertthat,assert_that)
importFrom(graphics,axis)
importFrom(graphics,box)
importFrom(graphics,hist)
importFrom(graphics,mtext)
importFrom(graphics,par)
importFrom(graphics,plot)
importFrom(graphics,points)
importFrom(graphics,rect)
importFrom(igraph,"E<-")
importFrom(igraph,"V<-")
importFrom(igraph,E)
importFrom(igraph,V)
importFrom(igraph,graph.data.frame)
importFrom(igraph,plot.igraph)
importFrom(matrixStats,colSds)
importFrom(matrixStats,rowSds)
importFrom(methods,is)
importFrom(methods,new)
importFrom(pandaR,panda)
importFrom(penalized,optL1)
importFrom(penalized,penalized)
importFrom(penalized,predict)
importFrom(reshape,melt.array)
importFrom(reshape2,dcast)
importFrom(reshape2,melt)
importFrom(tidyr,spread)
importFrom(utils,write.table)
