# Conducts pathway test of metabolomics data using a weighted permutation test

## Documentation for package ‘metapone’ version 1.4.0

- DESCRIPTION file.
- User guides, package vignettes and other documentation.

## Help Pages

metapone-package | Conducts pathway test of metabolomics data using a weighted permutation test
bbplot1d | Plot of metapone result.
bbplot2d | Plot of metapone result.
ftable | Acessor functions for the feature mapping table in a metaponeResult object.
ftable-method | Acessor functions for the feature mapping table in a metaponeResult object.
ftable-method | Class "metaponeResult"
hmdbCompMZ | the m/z values of common adduct ions of HMDB metaboites
hmdbCompMZ.metapone | the m/z values of common adduct ions of metapone metaboites
metapone | METAbolic pathway testing using both POsitive and NEgative mode data
metaponeResult | Class "metaponeResult"
metaponeResult-class | Class "metaponeResult"
metaponeResult-method | Class "metaponeResult"
neg | Example negative mode data from the Metabolome Atlas of the Aging Mouse Brain
pa | Pathway-metabolite match file.
pos | Example positive mode data from the Metabolome Atlas of the Aging Mouse Brain
ptable | Acessor functions for the test result table in a metaponeResult object.
ptable-method | Class "metaponeResult"
ptable-method | Acessor functions for the test result table in a metaponeResult object.