Package: exomeCopy
Type: Package
Title: Copy number variant detection from exome sequencing read depth
Version: 1.44.0
Date: 2021-11-20
Author: Michael Love
Maintainer: Michael Love <michaelisaiahlove@gmail.com>
Description: Detection of copy number variants (CNV) from exome
        sequencing samples, including unpaired samples.  The package
        implements a hidden Markov model which uses positional
        covariates, such as background read depth and GC-content, to
        simultaneously normalize and segment the samples into regions
        of constant copy count.
License: GPL (>= 2)
LazyLoad: yes
Imports: stats4, methods, GenomeInfoDb
Depends: R (>= 3.5.0), IRanges (>= 2.5.27), GenomicRanges (>= 1.23.16),
        Rsamtools
Suggests: Biostrings
biocViews: CopyNumberVariation, Sequencing, Genetics
git_url: https://git.bioconductor.org/packages/exomeCopy
git_branch: RELEASE_3_16
git_last_commit: 2dd6598
git_last_commit_date: 2022-11-01
Date/Publication: 2022-11-01
NeedsCompilation: yes
Packaged: 2022-11-02 00:14:57 UTC; biocbuild
Built: R 4.2.1; x86_64-w64-mingw32; 2022-11-02 13:35:18 UTC; windows
ExperimentalWindowsRuntime: ucrt
Archs: x64
