GADGETS                 A function to run the GADGETS method
case                    SNP counts for the affected children of
                        case-parent triads.
chrom.fitness.score     A function to assign a fitness score to a
                        chromosome
combine.islands         A function to combine GADGETS results for
                        individual islands into a single dataset.
compute.graphical.scores
                        A function to compute SNP-pair scores for
                        network plots of results.
dad                     SNP counts for the fathers of case-parent
                        triads.
epistasis.test          A function to run a test of the null hypothesis
                        that a collection of SNPs do not exhibit
                        epistasis, conditional upon observed marginal
                        SNP-disease associations.
epistasisGA             'epistasisGA' package
global.test             A function to run a global test of the null
                        hypothesis that there are no SNP-disease
                        associations across a range of chromosome sizes
mom                     SNP counts for the mothers of case-parent
                        triads.
network.plot            A function to plot a network of SNPs with
                        potential multi-SNP effects.
permute.dataset         A function to create permuted datasets for
                        permutation based hypothesis testing.
preprocess.genetic.data
                        A function to pre-process case-parent triad of
                        affected/unaffected sibling data.
run.gadgets             A function to run the GADGETS algorithm to
                        detect multi-SNP effects in case-parent triad
                        studies.
snp.annotations         RSID, REF, and ALT annotations for example
                        dataset SNPs
