# Generated by roxygen2: do not edit by hand

export(agrestiCoullCI)
export(bootstrapCompartments)
export(checkAssayType)
export(condenseRE)
export(condenseSE)
export(estRMT)
export(extractOpenClosed)
export(fexpit)
export(filterCompartments)
export(fisherZ)
export(fixCompartments)
export(flogit)
export(getABSignal)
export(getATACABsignal)
export(getAssayNames)
export(getBinMatrix)
export(getChrs)
export(getCorMatrix)
export(getDenoisedCorMatrix)
export(getDomainInflections)
export(getGlobalMeans)
export(getMatrixBlocks)
export(getSVD)
export(getSeqLengths)
export(getShrinkageTargets)
export(hdf5TFIDF)
export(ifisherZ)
export(importBigWig)
export(meanSmoother)
export(plotAB)
export(plotCorMatrix)
export(precomputeBootstrapMeans)
export(removeEmptyBoots)
export(scCompartments)
export(shrinkBins)
export(sparseToDenseMatrix)
export(summarizeBootstraps)
export(transformTFIDF)
import(BiocSingular)
import(DelayedArray)
import(DelayedMatrixStats)
import(GenomicRanges)
import(HDF5Array)
import(Matrix)
import(RaggedExperiment)
import(SummarizedExperiment)
import(ggplot2)
import(parallel)
import(reshape2)
import(scales)
importFrom(Matrix,nearPD)
importFrom(RMTstat,dmp)
importFrom(RMTstat,qmp)
