701e84ad681afb90c77a7e99f6b4509f *DESCRIPTION
05325c57254a46ac5c3d8dd269ce8e69 *INDEX
ec357b4938cc925fff87b6c66c94c7d9 *Meta/Rd.rds
b9ea550035330f0c8ab2ca48f0dffdf9 *Meta/data.rds
795ef1933dd6e5a92764af4150ef47ba *Meta/features.rds
e01db094a2f0225807b3846afd53a328 *Meta/hsearch.rds
8c1bf9b225d5691bf78ff4334c36173d *Meta/links.rds
ef1730761bb34a8eb60b2c1b4fba3eb8 *Meta/nsInfo.rds
0f28447813bf1989008c56bc5c61a506 *Meta/package.rds
16b5b8d61a4f78a8ca91168bb8919776 *Meta/vignette.rds
cf05eddfc4f8fabbfeb6990dd4e6bfb5 *NAMESPACE
3b7748bd558f17b0b296ec6bc9192af8 *NEWS
d6c68f1fe41ced6e98a766a3757313da *R/YAPSA
24cc8234ff18db3ac56cb4abbd6769bf *R/YAPSA.rdb
652d51b6022420d014b94b42cda2c9ab *R/YAPSA.rdx
70924c96e4f552a8c90c163acf5971b4 *YAPSA_datasets/cutoffs.rda
20813a4de2bc59103ef74239960a0826 *YAPSA_datasets/cutoffs_pcawg.rda
8dd609f861f4d06425a08b8b01a571a6 *YAPSA_datasets/sigs.rda
f4e56a8d4aaaf817f7fe912c03b14fc7 *YAPSA_datasets/sigs_pcawg.rda
4b9f5e983d7ea469ea0a2b29f3b4656c *data/AlexCosmicValid_sig_df.rda
5773b0248f0d4512e816893db33e17af *data/GenomeOfNl_MutCat.rda
957998fc5a197d63d25cfe5c740cff4d *data/GenomeOfNl_raw.rda
70924c96e4f552a8c90c163acf5971b4 *data/cutoffs.rda
20813a4de2bc59103ef74239960a0826 *data/cutoffs_pcawg.rda
8d2217cdfd41dce00bf577b6611d5a0f *data/exchange_colour_vector.rda
acff4a1276f5033015369a6944b961b5 *data/lymphomaNature2013_mutCat_df.rda
a707e6fe0b59a9c3c73c328feb546a42 *data/lymphoma_Nature2013_raw.rda
d494e4cbe6bcc48fb7381ea849d8dd28 *data/lymphoma_PID.rda
a6f15f9ae8e373ce599a44e9073d2eb0 *data/lymphoma_cohort_LCD_results.rda
0a6400a8c40555ef4a3f70081a46416c *data/lymphoma_test.rda
8dd609f861f4d06425a08b8b01a571a6 *data/sigs.rda
f4e56a8d4aaaf817f7fe912c03b14fc7 *data/sigs_pcawg.rda
220eee09032bc543ce567cc1b0896446 *data/smallCellLungCancerMutCat_NatureGenetics2012.rda
bb0eac89a83bccfde83df534b24d20ed *data/targetCapture_cor_factors.rda
20ee1c98b6eb9668fcdfd6877add87c1 *doc/YAPSA.R
4eecea3fa133da2b306eb137ed241d66 *doc/YAPSA.Rmd
bf8e579ce75517a971e1838451b5e391 *doc/YAPSA.html
ef08ff268801903944406dfca25aca31 *doc/index.html
86da0d3d43b09df129eec7db55824307 *doc/vignette_confidenceIntervals.R
6d2938fcf65762a86c1f70e04a9c677e *doc/vignette_confidenceIntervals.Rmd
b512a9dc043a2ca2c51dba482e8a42f9 *doc/vignette_confidenceIntervals.html
d26104889b400f4a5c4106b12b5891cc *doc/vignette_exomes.R
3e4b3f68ad1393950df2760bf1bbd3e3 *doc/vignette_exomes.Rmd
28862467fcbabe9fed384e711c8d5228 *doc/vignette_exomes.html
57cb46f57f713f953107c4ebf2c8e997 *doc/vignette_signature_specific_cutoffs.R
713da5c905c9567c95ca5a844ca93cb0 *doc/vignette_signature_specific_cutoffs.Rmd
22f58e92690f4ae95c4c914963b11b8b *doc/vignette_signature_specific_cutoffs.html
8800c1f01027a34d596abd6409f7a639 *doc/vignette_stratifiedAnalysis.R
f69e151f572fcd090627b6a0ef8a20e5 *doc/vignette_stratifiedAnalysis.Rmd
570a8f3127dae2d34f93b7c9d40a22dd *doc/vignette_stratifiedAnalysis.html
01eae264e3cd8a87d633b716b2963ae2 *doc/vignettes_Indel.R
9158f164dc099e7dd60e6f088f21bde8 *doc/vignettes_Indel.Rmd
feb9c49a35c5c2efe7e5298fb501c149 *doc/vignettes_Indel.html
89c6eba2c3b5846b45435ab5b77addfa *foreign/annotate_vcf.pl
bcfc276d6945ad64724291808b1eac47 *foreign/kmer_frequencies.pl
310cb56299ca5c0f7931dbe4bd617f1e *help/AnIndex
5fbf86e650dcaaf09975a30795ded539 *help/YAPSA.rdb
1499fadae2b4fadc95d9ced62627cfb6 *help/YAPSA.rdx
60d68a428802f34633b3efcace51b73c *help/aliases.rds
db501a411693031496f64e077505e3e0 *help/paths.rds
2b5546c911c855b0b5c239d30fe80b15 *html/00Index.html
3845aef6126cf18c45937f292f23508c *html/R.css
