From geospatial to spatial omics

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Documentation for package ‘Voyager’ version 1.0.10

• DESCRIPTION file.
• User guides, package vignettes and other documentation.

Help Pages

annotGeometryMoransI	Univariate spatial stiatistics
annotGeometryUnivariate	Univariate spatial stiatistics
calculateMoransI	Univariate spatial stiatistics
calculateMoransI-method	Univariate spatial stiatistics
calculateUnivariate	Univariate spatial stiatistics
calculateUnivariate-method	Univariate spatial stiatistics
clusterCorrelograms	Find clusters of correlogram patterns
clusterMoranPlot	Find clusters on the Moran plot
colDataMoransI	Univariate spatial stiatistics
colDataUnivariate	Univariate spatial stiatistics
colFeatureData	Get metadata of colData and rowData
colGeometryMoransI	Univariate spatial stiatistics
colGeometryUnivariate	Univariate spatial stiatistics
ditto_colors	Colorblind friendly palette from dittoSeq
ElbowPlot	Plot the elbow plot or scree plot for PCA
getDivergeRange	Get beginning and end of palette to center a divergent palette
moranPlot	Use ggplot to plot the moran.plot results
plotAnnotGraph	Plot spatial graphs
plotCellBin2D	Plot cell density as 2D histogram
plotColDataBin2D	Plot colData and rowData with 2D histograms
plotColDataFreqpoly	Plot frequency polygons for colData and rowData columns
plotColDataHistogram	Plot histograms for colData and rowData columns
plotColGraph	Plot spatial graphs
plotCorrelogram	Plot correlogram
plotDimLoadings	Plot top PC loadings of genes
plotLocalResult	Plot local results
plotMoranMC	Plot Moran/Geary monte carlo results
plotRowDataBin2D	Plot colData and rowData with 2D histograms
plotRowDataFreqpoly	Plot frequency polygons for colData and rowData columns
plotRowDataHistogram	Plot histograms for colData and rowData columns
plotSpatialFeature	Plot gene expression in space
rowFeatureData	Get metadata of colData and rowData
runMoransI	Univariate spatial stiatistics
runUnivariate	Univariate spatial stiatistics
spatialReducedDim	Plot dimension reduction components in space